 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016450737.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Trihelix |
| Protein Properties |
Length: 328aa MW: 36160.9 Da PI: 10.0854 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016450737.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.6 | 1.2e-16 | 36 | 120 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+
XP_016450737.1 36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsargNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 120
5*************************************54444445567788******************99984.....57****9996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MDQEISNKDD FFPRNKQQNY HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK 60
LKGQDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD 120
LLLRGNNASA ASTSVIPPPP PAVVEPPQPV TVLPPPPPAP VPPPPPPPPP MAVPIGNGGQ 180
NSNGSNGVDR AAKEDTMDAK LSDNAAISDK NAMDTNSSTP ALYSDDKSKS KNVKVRSMEK 240
RSKNKRKRAE GWEIGESIRL LAEVVVRSEQ ARMETMREIE RMRAEAEAKR GEMDLKRTEI 300
IANTQLEIAK LFASIAKGVD PSLRIGRS
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975440 | 2e-99 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 1e-56 | sequence-specific DNA binding transcription factors |
