PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016450712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 41583.9 Da PI: 4.7165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.8e-10 | 297 | 337 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR++iN+++ L+ l+P+ +K++ +++Le+Av Y+k Lq XP_016450712.1 297 RRRREKINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 337 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 289 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-13 | 292 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-11 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-11 | 296 | 341 | No hit | No description |
Pfam | PF00010 | 1.6E-7 | 297 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEQIGAFFDE EWESLTKLFS STETADFMLQ LHGDQGNLFA INAHENAGSS YENGRPQSAF 60 YQIGDEQHEA NTNFQYFSHE SSITSCGSDG MFFPNNPSRD IDHDVNNQLL AISNQTDDQS 120 IDFFVMDNKN NLENLSINFP DDTNDMDSPL SKEEMVCDQL DNVGISPVSN KEMQLKRKFD 180 KIALQSSSKE QKLKEELPEN PKKKSRGSAQ DVQKNKKKAQ PKGKKNQKIT QINNEEGEDQ 240 GTNNAAIQNG QSSSCCSSED DSNASQELNG GAISSKSKGK SRASRGAATD PQSLYARRRR 300 EKINERLRIL QNLVPNGTKV DISTMLEEAV TYVKFLQLQI KLLSSDELWM YAPIAYHGMD 360 IGLYQNMMPS L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 301 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804256.1 | 0.0 | PREDICTED: transcription factor bHLH85-like | ||||
Refseq | XP_016450712.1 | 0.0 | PREDICTED: transcription factor bHLH85-like | ||||
TrEMBL | A0A1S3YFA4 | 0.0 | A0A1S3YFA4_TOBAC; transcription factor bHLH85-like | ||||
TrEMBL | A0A1U7YQL0 | 0.0 | A0A1U7YQL0_NICSY; transcription factor bHLH85-like | ||||
STRING | XP_009804256.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 4e-33 | root hair defective 6-like 4 |