PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450456.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 326aa    MW: 36351.3 Da    PI: 7.3902
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP936.1e-2951148389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL++  k++i++l+ ++ ++  ++  +++++  a+n +++        
  XP_016450456.1  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEVTKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 145
                     78*************************************************************66666444322222222221111122233333 PP

             TCP  89 ..k 89 
                        
  XP_016450456.1 146 vyG 148
                     321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.77452110IPR017887Transcription factor TCP subgroup
PfamPF036342.5E-2652146IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNSSGNSFQA KQESGGTNNS KLTSKATTST SSRQWGGFKN PRIVRVSRTF GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI EVTKHEIDKL PPLQIPPGYF  120
AQFQGDHHFD AANLRAKSKV IDTDTVYGKN KSIASNEQEN QEEIGGYVPQ ISAQSFFPLG  180
NRSPNLPGLM NNSMPFNSYY PWEPNSSLSL AHFGQPQTEE SSQNNFPLSL ASSLSLPSGS  240
QVYFNPTATT FSPMISPYMT NYPIENDPRA QLNHFHFLSS SSQHVLPNPP VSTLNLIKPF  300
SLNDDPRWIH SREDDDDSQP HEGGDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1957111155Putative transcription factor PCF6
5zkt_B7e-1957111155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781748.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_016450456.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A1S3YDZ20.0A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBLA0A1U7WT270.0A0A1U7WT27_NICSY; transcription factor TCP5-like
STRINGXP_009781748.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5