PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450413.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 215aa    MW: 24922.6 Da    PI: 9.2687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
   XP_016450413.1 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 59
                     799*******************************************97 PP
2Myb_DNA-binding49.87.7e-1665110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_016450413.1  65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                      6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.411159IPR017930Myb domain
SuperFamilySSF466896.97E-299106IPR009057Homeodomain-like
SMARTSM007172.1E-141161IPR001005SANT/Myb domain
PfamPF002492.6E-151259IPR001005SANT/Myb domain
CDDcd001677.94E-111559No hitNo description
Gene3DG3DSA:1.10.10.601.2E-211566IPR009057Homeodomain-like
PROSITE profilePS5129423.78860114IPR017930Myb domain
SMARTSM007173.7E-1464112IPR001005SANT/Myb domain
PfamPF002492.2E-1465110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2267113IPR009057Homeodomain-like
CDDcd001673.41E-1068110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKDKEFKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NKRSCRGKKK  120
HVKSKEANNR SPLGKESQEF PAETVSNKEV AANSVLDSWI EEMQDFNCSL LSPLSMNNVP  180
FLEDEPFIPI LDDIVLLEAF TSTGKEAWNE IQPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220540.0AF122054.1 Solanum tuberosum clone 9 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593348.11e-158PREDICTED: transcription factor MYB82
RefseqXP_016450413.11e-158PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF72e-60MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A1S3YEI51e-156A0A1S3YEI5_TOBAC; transcription factor MYB82-like
STRINGXP_009593348.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.17e-63myb domain protein 82