PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016450164.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 308aa MW: 33051.7 Da PI: 7.2624

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016450164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_016450164.1 139 YECKTCNRTFPSFQALGGHRTSH 161 99*********999998888777 PP
2	zf-C2H2	13.7	0.00019	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_016450164.1 210 HECSICGAEFSSGQALGGHMRRH 232 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.82E-8	138	161	No hit	No description
Pfam	PF13912	9.8E-13	138	163	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.059	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.72	139	166	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-4	201	232	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.82E-8	205	232	No hit	No description
PROSITE profile	PS50157	9.743	210	232	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	210	232	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.9E-13	210	234	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	212	232	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGGGAGGG TGGSSDDIGG 60 GGEFYSSSIQ YSPTTSSTHI STSSEEDEDM ANCLILLAQS GRCQKLQVES SERKMVKISS 120 RKFTEMATCT TGKAGFYVYE CKTCNRTFPS FQALGGHRTS HKKAKTIVEE KKSTADSENP 180 DHQNEEKLNE IITPTQIVNK GNSHSKPKIH ECSICGAEFS SGQALGGHMR RHRPPPMITA 240 TNSTKVTGET TSESSHNDDE NSNKEKPRII LSLDLNLPAP PEDDSKFGFS ANKQSLVFSP 300 TALVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	50	TGGGGGGAGGGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	7e-84	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450164.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S3YDF3	0.0	A0A1S3YDF3_TOBAC; zinc finger protein ZAT5-like
STRING	XP_009776555.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	7e-51	C2H2 family protein