PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450164.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 308aa    MW: 33051.7 Da    PI: 7.2624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011139161123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_016450164.1 139 YECKTCNRTFPSFQALGGHRTSH 161
                     99*********999998888777 PP
2zf-C2H213.70.00019210232123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_016450164.1 210 HECSICGAEFSSGQALGGHMRRH 232
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-8138161No hitNo description
PfamPF139129.8E-13138163IPR007087Zinc finger, C2H2
SMARTSM003550.059139161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72139166IPR007087Zinc finger, C2H2
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4201232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-8205232No hitNo description
PROSITE profilePS501579.743210232IPR007087Zinc finger, C2H2
SMARTSM003550.01210232IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-13210234IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVTSTSST GGGGGGAGGG TGGSSDDIGG  60
GGEFYSSSIQ YSPTTSSTHI STSSEEDEDM ANCLILLAQS GRCQKLQVES SERKMVKISS  120
RKFTEMATCT TGKAGFYVYE CKTCNRTFPS FQALGGHRTS HKKAKTIVEE KKSTADSENP  180
DHQNEEKLNE IITPTQIVNK GNSHSKPKIH ECSICGAEFS SGQALGGHMR RHRPPPMITA  240
TNSTKVTGET TSESSHNDDE NSNKEKPRII LSLDLNLPAP PEDDSKFGFS ANKQSLVFSP  300
TALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13950TGGGGGGAGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755187e-84HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450164.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3YDF30.0A0A1S3YDF3_TOBAC; zinc finger protein ZAT5-like
STRINGXP_009776555.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-51C2H2 family protein