PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450028.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 582aa    MW: 64769.1 Da    PI: 6.2714
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.86.4e-1262125811373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+++++l   + l+++ + ++s +gdp+qRl ay++e+L ar   s++++y++l+++e +     + l+++++++e++P+lkf++
  XP_016450028.1 212 LKQLLIACARALAENKLDDFEVLVTKARSTVSITGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILYEICPYLKFGY 303
                     689***************************************************9**************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+ vHiiDf+i qG+QW++LlqaLa+Rp+g+p +Ri g+++p s+  + + l ++++rL+ + e++++ +efn+ v     +
  XP_016450028.1 304 MAANGAIAEACRNENYVHIIDFQIAQGTQWMTLLQALAARPGGAPYVRISGIDDPVSQyaRGDGLAAVEKRLSAISEKFNIAVEFNA-VPVFAPE 397
                     *******************************************************999999**************************.6888899 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++  +L+v+pgEa+aVn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++F+ rfleal+yy a+f+s++++l+r+ +eri
  XP_016450028.1 398 VTKAMLDVRPGEAVAVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPFFPRFLEALDYYHAMFESIDVTLARDRKERI 492
                     99********************************************************************************************* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+r+++ + y++ e++g+++lgWk+r+L+s+SaW
  XP_016450028.1 493 NVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFRQYPLSSYVNSVIKDLMRRYS-EHYTLVEKDGAMLLGWKERNLISASAW 581
                     **************************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.743186563IPR005202Transcription factor GRAS
PfamPF035142.2E-123212581IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDAHHFYDYG VTGSDLSCSS YPTISSLPNR LSGTSKFDSE NSPISPLANY LDSETFTTLS  60
DCQEQHSSTE NLSGASSSSN SSLDYNHYFH RPSPSPDCLP EGLLVFSGGN AALQNAVHSQ  120
NMQHALLQLE SALMGPDEEV TKSSPSYGGN KAAQTSNQRS RAWTNESKVL HQNETQRSQI  180
SLFTKSGNGI LSQERDKVLY NLPLHGVPSS NLKQLLIACA RALAENKLDD FEVLVTKARS  240
TVSITGDPIQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNENYV HIIDFQIAQG TQWMTLLQAL AARPGGAPYV RISGIDDPVS  360
QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VAVNFPLQLH  420
HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA PFFPRFLEAL DYYHAMFESI  480
DVTLARDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKSRFMM AGFRQYPLSS  540
YVNSVIKDLM RRYSEHYTLV EKDGAMLLGW KERNLISASA WY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-632095811374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7676600.0KJ767660.1 Nicotiana tabacum GRAS2 protein (GRAS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794690.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016450028.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3YDF50.0A0A1S3YDF5_TOBAC; scarecrow-like protein 21
TrEMBLA0A1U7Y7940.0A0A1U7Y794_NICSY; scarecrow-like protein 21
STRINGXP_009794690.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-177GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]