 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016449737.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 179aa MW: 20881.2 Da PI: 10.6659 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016449737.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye+s+
XP_016449737.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFSN 59
8***********************************************95 PP
|
| 2 | K-box | 76.7 | 6.3e-26 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++ + +q+e+a L++++++Lq+++R+++Ge+L L++k+Lq+Le++Le+s++ iR kK+++l+++i+el k +++en +L +k++
XP_016449737.1 81 NPVSELKLWQKEAAMLRQQLQELQQNHRQVMGEQLYGLTIKDLQHLENRLETSIRGIRMKKEQILHDEIQELSWKGSLMHQENLELVQKVK 171
45677899********************************************************************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 4.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.27E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.36E-42 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 2.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 9.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.5E-23 | 85 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.633 | 86 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFSNT 60
SMKSIVERYN KTKDERNQLH NPVSELKLWQ KEAAMLRQQL QELQQNHRQV MGEQLYGLTI 120
KDLQHLENRL ETSIRGIRMK KEQILHDEIQ ELSWKGSLMH QENLELVQKV KVNAKNKGK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975441 | 2e-46 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
