 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016449592.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 251aa MW: 28417.8 Da PI: 4.6817 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016449592.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 41.6 | 2.2e-13 | 54 | 96 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L
XP_016449592.1 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 96
57*********************66......****************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 251 aa
Download sequence Send
to blast |
MENIGDEYKN YWETNMFLQN EELDSSYFDE AISAYYDSSS PDGAQSSLAS KNIVSERNRR 60
KKLNERLFAL RAVVPNISKM DKASIIKDAI EYIQELHEQE RRIQAEISEL ESGRSKKNTS 120
LEFDQDASFD AKPKRSRRLE QQYGYDSSGS TTRSSPSSSP VEVLELRVSS MGEKTVVVSL 180
TCSKRTDTMV KVCEIFESLN IKIISANITA FSGRLLKTAF IEADEEEKEL LKMRIETAIA 240
TLNDPDSPMS T
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_B | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_E | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_F | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_G | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_I | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_M | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| 5gnj_N | 7e-14 | 52 | 96 | 9 | 53 | Transcription factor MYC2 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC253645 | 1e-72 | AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence. |
| GenBank | AC253676 | 1e-72 | AC253676.4 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-50e11 map 7, complete sequence. |
| GenBank | HG975446 | 1e-72 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
| GenBank | HG975519 | 1e-72 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
