PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016449484.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 796aa MW: 90231.1 Da PI: 7.8077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016449484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.6e-23	52	135	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+++GF +++++s++sk++g++++ + Cs+ g ++e+ ++ r+ +t+Cka++++k+++dgkw+++++++eHnHe++p XP_016449484.1 52 SFYKEYARSLGFGITIKASRRSKNSGKFIDVKIACSRFGAKRESGSS-------RSCPKTDCKASVHMKRRQDGKWYIYSFVKEHNHEICP 135 5**************************************998877.......9999****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-20	52	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-26	217	309	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	495	533	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-7	508	535	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.4E-6	510	530	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MGKSAVDQNV KFDRSGDAIG MDVVDVDIID KCIANNEPQK GMEFETKEAA YSFYKEYARS 60 LGFGITIKAS RRSKNSGKFI DVKIACSRFG AKRESGSSRS CPKTDCKASV HMKRRQDGKW 120 YIYSFVKEHN HEICPDDFYC SVRGRSKQSA DVEYQKKGLQ LALNEGDVEV LLDTLALMQA 180 ESPNSYYAID FDKEKRMRNV FWVDAKGRND YGHFCDVVYL DTYYIRNKYT VPFIPIVGVN 240 HHFQFLLLGC ALVGDETSST FAWLMHTWFR AVGGQSPRVV ITDDDTSVKE AVEEVFPEAR 300 HCFCLLHVMG KVSQDLGNKI SKTEDFVNKL KECMWLTLNE EEFEKRWWKM VDTFKLRDNE 360 LIRSLFENRT KWVPVYMRNT FLAGFSTVEW SESVSSSFER YISSETTFKE FIDRYKLFVL 420 DKYEEEAKAD IETRHKPPTI KTLSPYEKQM STVYTNSLFM KFQAEVVGVA ACTILNEVEE 480 GTEKLYRVND RDKHQSFMLS WSGRESYIVC SCCSFEYIGI LCRHAITVLQ VNGVPNIPSV 540 YILKRWTREA KIKGRACGIS SPPCYSIQRL NDLCKLAAKF GEVGSSSQET YESAVYAIKA 600 AMQDCVNANN SVKSALLSNI SSSQCNPNVD EEIQDGSTVK SSKRKKMQKK RKVQSNAEVL 660 STRIQDSSMQ MDQPNSKLPS HDVAFLAQRP VQGMDSGSRI ATTDGYYATH QSIHGLGQLS 720 SFSMLRDNRY SSHQASHGVL GNVNYISAPG DHYSPQSFQG LLQGQLSFRA PLLQTSFDIQ 780 GNSSDMDNST SVAGKH

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MGKSAVDQNV KFDRSGDAIG MDVVDVDIID KCIANNEPQK GMEFETKEAA YSFYKEYARS  60
LGFGITIKAS RRSKNSGKFI DVKIACSRFG AKRESGSSRS CPKTDCKASV HMKRRQDGKW  120
YIYSFVKEHN HEICPDDFYC SVRGRSKQSA DVEYQKKGLQ LALNEGDVEV LLDTLALMQA  180
ESPNSYYAID FDKEKRMRNV FWVDAKGRND YGHFCDVVYL DTYYIRNKYT VPFIPIVGVN  240
HHFQFLLLGC ALVGDETSST FAWLMHTWFR AVGGQSPRVV ITDDDTSVKE AVEEVFPEAR  300
HCFCLLHVMG KVSQDLGNKI SKTEDFVNKL KECMWLTLNE EEFEKRWWKM VDTFKLRDNE  360
LIRSLFENRT KWVPVYMRNT FLAGFSTVEW SESVSSSFER YISSETTFKE FIDRYKLFVL  420
DKYEEEAKAD IETRHKPPTI KTLSPYEKQM STVYTNSLFM KFQAEVVGVA ACTILNEVEE  480
GTEKLYRVND RDKHQSFMLS WSGRESYIVC SCCSFEYIGI LCRHAITVLQ VNGVPNIPSV  540
YILKRWTREA KIKGRACGIS SPPCYSIQRL NDLCKLAAKF GEVGSSSQET YESAVYAIKA  600
AMQDCVNANN SVKSALLSNI SSSQCNPNVD EEIQDGSTVK SSKRKKMQKK RKVQSNAEVL  660
STRIQDSSMQ MDQPNSKLPS HDVAFLAQRP VQGMDSGSRI ATTDGYYATH QSIHGLGQLS  720
SFSMLRDNRY SSHQASHGVL GNVNYISAPG DHYSPQSFQG LLQGQLSFRA PLLQTSFDIQ  780
GNSSDMDNST SVAGKH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016449484.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A1S3YBK1	0.0	A0A1S3YBK1_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009610340.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2