PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016449483.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 840aa MW: 96186.1 Da PI: 6.5936

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016449483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.3	9.7e-27	132	234	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_016449483.1 132 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 226 9*************************************999999899999888776555556699************************ PP FAR1 84 eHnHelap 91 eHnHel p XP_016449483.1 227 EHNHELLP 234 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-24	132	234	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-28	332	424	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	612	648	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.8E-6	613	647	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	623	650	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MRGEGARLIA CITEMGSELI LCNLQVSVQE KSIGFQLFSI MDIDLRLPSR DHEKEEEEEE 60 QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN TAVANIIEFK EDVNLEPLAG 120 MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID AKFACSRYGT KREYEKSANR 180 PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI IHRFEKEHNH ELLPAQAVSE 240 QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG GDINVLLEFF IQMQSLNSNF 300 FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI RNKYKMPLAL FVGVNQHYQF 360 MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD QVLKSVISEA LPSSLHYFCM 420 WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK RWRKLVDRFD LGEVELIHLL 480 YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK TTVQEFVKQY ETILQDRYEE 540 EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE VLGAVACIPK REQQDETTIT 600 FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA LVVLQICGVS SIPLQYILKR 660 WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS LSQESYSFAL RALDDAFGSC 720 VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK NSFTKKRKVN SEPDVLAVGA 780 ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR DNYYGNQQTI QGLFCCFLAL

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MRGEGARLIA CITEMGSELI LCNLQVSVQE KSIGFQLFSI MDIDLRLPSR DHEKEEEEEE  60
QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN TAVANIIEFK EDVNLEPLAG  120
MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID AKFACSRYGT KREYEKSANR  180
PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI IHRFEKEHNH ELLPAQAVSE  240
QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG GDINVLLEFF IQMQSLNSNF  300
FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI RNKYKMPLAL FVGVNQHYQF  360
MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD QVLKSVISEA LPSSLHYFCM  420
WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK RWRKLVDRFD LGEVELIHLL  480
YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK TTVQEFVKQY ETILQDRYEE  540
EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE VLGAVACIPK REQQDETTIT  600
FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA LVVLQICGVS SIPLQYILKR  660
WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS LSQESYSFAL RALDDAFGSC  720
VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK NSFTKKRKVN SEPDVLAVGA  780
ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR DNYYGNQQTI QGLFCCFLAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013715	0.0	BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016449483.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1S3YBU8	0.0	A0A1S3YBU8_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3
STRING	XP_009610341.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]