PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016449478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 850aa MW: 97341.8 Da PI: 6.6504 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.3 | 9.8e-27 | 92 | 194 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_016449478.1 92 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 186 9***************************************999999899999888776555556699**************************** PP FAR1 84 eHnHelap 91 eHnHel p XP_016449478.1 187 EHNHELLP 194 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-24 | 92 | 194 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-28 | 292 | 384 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.656 | 572 | 608 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.8E-6 | 573 | 607 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-7 | 583 | 610 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MDIDLRLPSR DHEKEEEEEE QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN 60 TAVANIIEFK EDVNLEPLAG MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID 120 AKFACSRYGT KREYEKSANR PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI 180 IHRFEKEHNH ELLPAQAVSE QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG 240 GDINVLLEFF IQMQSLNSNF FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI 300 RNKYKMPLAL FVGVNQHYQF MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD 360 QVLKSVISEA LPSSLHYFCM WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK 420 RWRKLVDRFD LGEVELIHLL YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK 480 TTVQEFVKQY ETILQDRYEE EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE 540 VLGAVACIPK REQQDETTIT FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA 600 LVVLQICGVS SIPLQYILKR WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS 660 LSQESYSFAL RALDDAFGSC VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK 720 NSFTKKRKVN SEPDVLAVGA ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR 780 DNYYGNQQTI QGLGQLNSIA PTHDGYYGAQ PTMHGLGQMD FFRAPSFPYG IRDEPNVRSA 840 QLHDEASRHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013715 | 0.0 | BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449476.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Refseq | XP_016449477.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1S3YBV2 | 0.0 | A0A1S3YBV2_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
STRING | XP_009610341.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |