PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016449477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 890aa MW: 101710 Da PI: 6.5818 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.2 | 1e-26 | 132 | 234 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ dgkw ++++e+ XP_016449477.1 132 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPDGKWIIHRFEK 226 9***************************************999999899999888776555556699**************************** PP FAR1 84 eHnHelap 91 eHnHel p XP_016449477.1 227 EHNHELLP 234 *****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-24 | 132 | 234 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-28 | 332 | 424 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.656 | 612 | 648 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-6 | 613 | 647 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.0E-7 | 623 | 650 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MRGEGARLIA CITEMGSELI LCNLQVSVQE KSIGFQLFSI MDIDLRLPSR DHEKEEEEEE 60 QNGIINMLDN VEKMHSDDGM QGMLVVVEEK MHAEDGGDMN TAVANIIEFK EDVNLEPLAG 120 MEFESHGEAY AFYQEYARSM GFNTAIQNSR RSKTSREFID AKFACSRYGT KREYEKSANR 180 PRSRQGNKQD PENATGRRAC AKTDCKASMH VKRRPDGKWI IHRFEKEHNH ELLPAQAVSE 240 QTRRMYAAMA RQFAEYKNVV GLKSDSKGPF EKGRNSAMEG GDINVLLEFF IQMQSLNSNF 300 FYAVDVGEDQ RVRNLFWVDA KARHDYANFS DVVSFDTTYI RNKYKMPLAL FVGVNQHYQF 360 MLLGCALVSD EIATTFSWVM RTWLKAMGGQ APKTVITDHD QVLKSVISEA LPSSLHYFCM 420 WHMLGKVSET LNHVIKQNEK FMAKFEKCIY RSSTDEEFEK RWRKLVDRFD LGEVELIHLL 480 YEDRVKWTPT FMRDAFLAGM STVQRSESVN SFFDKYVHKK TTVQEFVKQY ETILQDRYEE 540 EAKADSDTWN KQPALKSPSP FEKHVAGLYT HTVFKKFQAE VLGAVACIPK REQQDETTIT 600 FSVKDYEKDQ DFIVTLNEVK SEISCVCHLF EFKGYLCRHA LVVLQICGVS SIPLQYILKR 660 WTKDAKSKYS MTDGSEDVQS RVQRYNELCY RAMKLSEEGS LSQESYSFAL RALDDAFGSC 720 VTFNNSNKNI LEAGTSSAPG LLCVEDDNQS RSMSKTNKKK NSFTKKRKVN SEPDVLAVGA 780 ADSLQQMDKL NSRPVTLDGY FGPQQSVQGM VQLNLMAPTR DNYYGNQQTI QGLGQLNSIA 840 PTHDGYYGAQ PTMHGLGQMD FFRAPSFPYG IRDEPNVRSA QLHDEASRHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013715 | 0.0 | BT013715.1 Lycopersicon esculentum clone 132560F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449476.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Refseq | XP_016449477.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1S3YBV2 | 0.0 | A0A1S3YBV2_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X1 | ||||
STRING | XP_009610341.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |