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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37805.1 Da PI: 6.3135 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.3e-28 | 139 | 198 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dg++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp v+e+tY+++H++ XP_016448796.1 139 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDDDPYVFEVTYRSQHTC 198 7****************************999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-27 | 136 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-25 | 137 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-37 | 138 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.277 | 139 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 139 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDETTATILY GCKLAKELEA NLQNWANQPQ FTLNKTEEIV AVFNNVKERL SYYHQQQQQA 60 LEFFHAAEML GERPATAAFA VHGLPPAQES DQMGVSDSSR AGGSSSSSSQ RQRRRTGDTD 120 RRTVSVAAPR MGNLELPPED GFTWRKYGQK EILGSRFPRA YYRCTHQKLY NCPAKKQVQR 180 LDDDPYVFEV TYRSQHTCYM SATAPTVPPP SVEEITRQTT TTLPPHLPLP PPTSASLSAH 240 WLSMDIKPQR DQGTSTIPFD IQRDFGHSIG GSLASICNMV STGGGSAGPS GGRYGREVDY 300 QLPVVDMADA MFNFSGSSSN NSMDIIFSSI DDKWDSAEKK E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-18 | 139 | 198 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-103 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448796.1 | 0.0 | PREDICTED: WRKY transcription factor 55-like | ||||
TrEMBL | A0A1S3Y8X6 | 0.0 | A0A1S3Y8X6_TOBAC; WRKY transcription factor 55-like | ||||
STRING | XP_009793195.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9280 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-43 | WRKY DNA-binding protein 55 |