PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448767.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 504aa MW: 55039.4 Da PI: 9.0317

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.5e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H XP_016448767.1 88 FFCEICNKGFKRDQNLQLHRRGH 110 67*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.4E-5	87	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.11E-5	87	110	No hit	No description
PROSITE profile	PS50157	10.741	88	110	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-6	88	110	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.021	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	130	160	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.11E-5	160	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MMNIHQKQQH VHIVEENMSN LTSASGEASI SASSNMNDTT TGGIFIPQNQ NPHHQQQIKK 60 KRNQAGNPDP EAEVIALSPK TLLATNRFFC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT 120 NKEVIRKKVY VCPERSCVHH DASRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDC 180 KALSKTCGTR EYRCECGTLF SRRDSFITHR AFCDTLAVES ARSAITGGNP IISFPSQAAG 240 SSSTSHMNQL QFQTPQYFNS HEFPASAAFS MKKEQPSHDF NVLRHYTEIP QWLMTCQPFV 300 GAGPGPPSSP AGFSSSVFQA TRLDQEYTQS HQDLTSTDFH DNPNPNFGGE AAVSPHISAT 360 ALLQKAAELS ATMSNKANSV SASSPAHSTG PAAILMRQSP HQTHVSVTTD SAAAAGSKQI 420 DQFGLNLSAR EFELTNSTGL INTLGNSYGN KVAAATVPSF SFANAAGFEG STFVDAFGGF 480 GTLNSKKDND FNGTTLLDPR NPLS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MMNIHQKQQH VHIVEENMSN LTSASGEASI SASSNMNDTT TGGIFIPQNQ NPHHQQQIKK  60
KRNQAGNPDP EAEVIALSPK TLLATNRFFC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT  120
NKEVIRKKVY VCPERSCVHH DASRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDC  180
KALSKTCGTR EYRCECGTLF SRRDSFITHR AFCDTLAVES ARSAITGGNP IISFPSQAAG  240
SSSTSHMNQL QFQTPQYFNS HEFPASAAFS MKKEQPSHDF NVLRHYTEIP QWLMTCQPFV  300
GAGPGPPSSP AGFSSSVFQA TRLDQEYTQS HQDLTSTDFH DNPNPNFGGE AAVSPHISAT  360
ALLQKAAELS ATMSNKANSV SASSPAHSTG PAAILMRQSP HQTHVSVTTD SAAAAGSKQI  420
DQFGLNLSAR EFELTNSTGL INTLGNSYGN KVAAATVPSF SFANAAGFEG STFVDAFGGF  480
GTLNSKKDND FNGTTLLDPR NPLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-30	161	222	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-30	161	222	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	127	KLKQRTNKEVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X82328	1e-164	X82328.1 S.tuberosum mRNA for DNA/RNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448767.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S3Y9W4	0.0	A0A1S3Y9W4_TOBAC; protein indeterminate-domain 7-like
STRING	XP_009603433.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-108	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]