 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_016448638.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
TCP |
Protein Properties |
Length: 279aa MW: 31327.9 Da PI: 6.5116 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_016448638.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 94.3 | 2.4e-29 | 4 | 101 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88
g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++ ++ +++++ a+n +++
XP_016448638.1 4 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 98
78*************************************************************77777554322222222221111122333333 PP
TCP 89 ..k 89
XP_016448638.1 99 vyG 101
321 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 279 aa
Download sequence Send
to blast |
RTFGGKDRHS KVCTIRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIEATKHEI 60 DKLPPLQIPP GYFAQFQGDH HFDAANLRAK SKVIDTDTVY GKNKSIASNE QENQEEIGGY 120 VPQISAQSFF PLVNKSPNLP GLINSSMPFN SYYPWEPNSN LSLAHFGQPQ IEESSQNNFP 180 LSLASSLSLP SGSQLYFNPT ATTFSPMISP YMTNYPIESD PRAQLNHFHF LSSSSQHVLP 240 NPSVPTLNLI KPFSLNDNPR WIHSREDEDD SQPHEGGNN
|
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 8e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |