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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 24015.5 Da PI: 8.2911 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.7 | 4.1e-38 | 123 | 206 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.eaesssssas 83 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++ ++++ ++ +++ssss+++ XP_016448480.1 123 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIAELSENiPQKDYNKIiNSNSSSSEDQ 206 79**************************************************************63333334433333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-38 | 123 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.557 | 125 | 183 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MFPSGNSQET FNLYISKAFL EKSFTYGHHQ NPSSSSRQED VASFLNFPSP FLDDHNNELP 60 SLNQILSHQH HQDQEAGDHH HAKESNVTHN ISCETSKEEM SIEAAKTSSK KRNLSATPPR 120 RRTGKKDRHS KICTAQGVRD RRVRLSLHIA RKFFDLQDML GFDKASKTIE WLFSKSNNAI 180 AELSENIPQK DYNKIINSNS SSSEDQKSES L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY166367 | 6e-96 | AY166367.1 Nicotiana sylvestris clone 12.4 TCP gene, partial sequence. | |||
GenBank | AY168163 | 6e-96 | AY168163.1 Nicotiana sylvestris NsTCP1 TCP protein (TCP) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448480.1 | 1e-156 | PREDICTED: transcription factor TCP12-like, partial | ||||
TrEMBL | A0A1S3Y8M4 | 1e-154 | A0A1S3Y8M4_TOBAC; transcription factor TCP12-like | ||||
STRING | XP_009603184.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-32 | TCP domain protein 12 |