PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016448289.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 387aa MW: 43320.2 Da PI: 6.8517

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d++k G g W+ +++ g++R++k+c++rw++yl XP_016448289.1 14 KGAWTPMEDKILIDYIKVNGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.5	2e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++k+lG++ W++Ia +++ Rt++++k++w++ XP_016448289.1 67 RGNITPDEEDLIIRLHKLLGNR-WSLIAGRLP-ERTDNEIKNYWNT 110 7999****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.63	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.68E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.78E-10	16	61	No hit	No description
PROSITE profile	PS51294	23.769	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	3.71E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGRKPCCSKE GLNKGAWTPM EDKILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEDLIIR LHKLLGNRWS LIAGRLPERT DNEIKNYWNT NIGKKLQQGV 120 APGQPNRIIS SINRQRPRSS HAKSSKSDPV TQPNKNNQEH TVPNQDSQYL LTDVGFGGSS 180 SSSSPCLVIR TKAIRCTKVF ITPPPTSSSV AEPQNVDQSH NEIAQRASNS HSVFPPCTRN 240 PVEFLRFHVD NSILDNDNDD KVMAEDLTIE NANTIVASSS SSSSLSVSSL SEQQQPISGS 300 TPTFSGELEN YNFNFMFGFD MDDPFLSELL NAPDICENLE NTTTVGDSCS KNEKERSYFP 360 SNYSQTTLFA EDTQHNDLEL WINGFSS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGRKPCCSKE GLNKGAWTPM EDKILIDYIK VNGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEEDLIIR LHKLLGNRWS LIAGRLPERT DNEIKNYWNT NIGKKLQQGV  120
APGQPNRIIS SINRQRPRSS HAKSSKSDPV TQPNKNNQEH TVPNQDSQYL LTDVGFGGSS  180
SSSSPCLVIR TKAIRCTKVF ITPPPTSSSV AEPQNVDQSH NEIAQRASNS HSVFPPCTRN  240
PVEFLRFHVD NSILDNDNDD KVMAEDLTIE NANTIVASSS SSSSLSVSSL SEQQQPISGS  300
TPTFSGELEN YNFNFMFGFD MDDPFLSELL NAPDICENLE NTTTVGDSCS KNEKERSYFP  360
SNYSQTTLFA EDTQHNDLEL WINGFSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-24	12	116	5	108	B-MYB
1h8a_C	7e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254197	4e-49	AC254197.3 Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-22m10 map 12, complete sequence.
GenBank	HG975524	4e-49	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448289.1	0.0	PREDICTED: myb-related protein 330-like
TrEMBL	A0A1S3Y8F8	0.0	A0A1S3Y8F8_TOBAC; myb-related protein 330-like
STRING	XP_009602508.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-61	myb domain protein 3