PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448135.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 448aa    MW: 48963 Da    PI: 6.633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12385430655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L  Av+YIk+L+
  XP_016448135.1 385 SIAERVRRTKISDRMRRLQELVPNM----DKQTNTADMLDFAVDYIKELE 430
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-11383434No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14384440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-9385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDQSRFQQQP INSGLTRYRS APSSYFSSLL SSTPSSGGGT NITSGGCGYA RDDFSQLQNS  60
RGSNSTDIEQ VFAKFVASIG NQGSNSGSFS SNQQIQENPA SNMNVRSEFI VPKQEVKQQH  120
ERLTRHRSSD YSLVSQMNYQ TQAQQQSQSQ FISSVKQEPE MNYQNLAQQQ IDNSKAATSL  180
AAVGNSFTFT TSVNSTRVSP VNIGGGVGAG GGNTNLTRYN SSPAGFFDLI NIENGSYGTG  240
ANATAETSLS TPKRFKTQVG ISSGKPPAFP GLMTPISEIG DKVVEENSSG DEHKNDESSI  300
TDFPIPSWED SHILSDDFLK AEDIEIEPFS NVNASDNQNC EGLSRPPIPL SHHLSLPTST  360
LEKLLQDSTP LNVRAKRGCA THPRSIAERV RRTKISDRMR RLQELVPNMD KQTNTADMLD  420
FAVDYIKELE KQVKILAEKR AKCTCTNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754502e-45HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448135.10.0PREDICTED: uncharacterized protein LOC107773192 isoform X2
TrEMBLA0A1S3Y7G40.0A0A1S3Y7G4_TOBAC; uncharacterized protein LOC107773192 isoform X2
STRINGXP_009620426.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-41bHLH family protein