 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016448129.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MYB |
| Protein Properties |
Length: 324aa MW: 36305.9 Da PI: 7.9883 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016448129.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 61 | 2.5e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l +++q+G+++W++I+++ g+ R++k+c++rw +yl
XP_016448129.1 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++
XP_016448129.1 68 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
789******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY 60
LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120
IDPVTHKPFS HLISEIANTL SPPQVPHLAE AALGCFKDEM LHLLTKKRIG FQFQFQQFGM 180
ASTATTAPNN GPSTSVKHED NKDETIEKIK YGLSRAIKEP DMLNPIKNWD TTNFPVSDNR 240
EFNYNFASLL NEGEGSPWNQ SLCSGSTCTA GGGLQQHKRI SNENCGENSE GGKEIVTRNG 300
STTVFNSDCV LWDISSDDLM NPMV
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ415755 | 0.0 | HQ415755.1 Lycium barbarum putative Myb103 transcription factor mRNA, complete cds. |
