PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 296aa    MW: 34829.3 Da    PI: 7.7194
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.41.1e-2446128186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  XP_016448116.1  46 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKDKGYNRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNELQ 128
                     7********************************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.07E-2445110No hitNo description
PfamPF138375.0E-2046130No hitNo description
PROSITE profilePS500907.44547103IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDPHLHLHHH QHQHQHQNPF SHQSVNVDTS GGGVNIGTTS GDRFPQWSIQ ETRDFLMIRA  60
ELDQTFMETK RNKLLWEVIA TKMKDKGYNR SPEQCKCKWK NLVTRYKGCE TLEPEALRQQ  120
FPFYNELQAI FAARMQRMLW IEAEGGSGSK KKTISQLSSD EEEENEDSEG EKVVGITKKK  180
RKVKGNNVNI VGSSSSAGSG NLVSSFKEIL DDFMKQQMAM EMQWLKAYEA REEERRIKEM  240
EWRQTMEALE NERLMMERRW REREEQRRIR EEARAEKRDA LITALLNKLG REDHNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A9e-1343126386DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-120HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-120HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448116.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW05e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1S3Y7860.0A0A1S3Y786_TOBAC; trihelix transcription factor GT-3b-like
STRINGXP_009588979.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-56Trihelix family protein