PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016448073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 104aa MW: 11577.1 Da PI: 4.5982 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41.4 | 4.2e-13 | 1 | 41 | 61 | 101 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++e+ XP_016448073.1 1 MVYEANARLRDPVYGCAGAICHLQKQVNELQVQLAKAQAEI 41 69**********************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.41 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-11 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MVYEANARLR DPVYGCAGAI CHLQKQVNEL QVQLAKAQAE IVNMQCEQAN LMALICMEMT 60 QSPQASPHHY SLGNLTNITY GNSQSNMTFL DDNSFGSFSE TLWT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 4e-52 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 4e-52 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016448073.1 | 6e-74 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-22 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S3Y7D4 | 1e-72 | A0A1S3Y7D4_TOBAC; LOB domain-containing protein 1-like | ||||
STRING | XP_009610820.1 | 4e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-25 | LOB domain-containing protein 1 |