PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 497aa MW: 54666.7 Da PI: 6.5126 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 315 | 362 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016447869.1 315 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 362 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.11E-10 | 309 | 366 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-17 | 309 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 311 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 311 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 315 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 317 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MEKDYFMNGG ITNPPLQFEP TMTFPSNWNS LHSGQSSDFF LNPNWDHDST HQFDSTLNSI 60 VSSSPAELIG KVTTVCSSPQ PPFNNNNTNN SCYTTPKLQM PNLGNSLPLN PPPVPLPAVS 120 ADPGFAQRAA KFSCFGSRSF NGRTSPWGEL THRYAQQLGN GKLPRVSSSP SLKQAGSPLQ 180 IKNSGQTRME LMSTNLCRPV TNSNEPVSEP SGETGPKTPT ELNSTRKRKT ASRGKTKEDA 240 PANGNMGGEG DDNARTKRCK QVEGNETETG TVNMEETKGN EGDETQNQTI ENQKPPEPPK 300 DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS 360 LQRQVEFLSM KLASVNPSLD FPAENLLPKD ICQPNGSLPQ PVFPVDYQQP RQQLSSDIPN 420 GVLSQCSANT LDNSLFRTLG MQLPSLDGLG QYLNQFPTMC EDDLQSIVQM GFTQNPNKDL 480 TLQSQSFPGP HQTSHXI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 229 | TRKRKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016447869.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
TrEMBL | A0A1S3Y744 | 0.0 | A0A1S3Y744_TOBAC; transcription factor bHLH62-like | ||||
STRING | XP_009621297.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-88 | bHLH family protein |