PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016447833.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 261aa MW: 30264.3 Da PI: 9.2766

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447833.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	2	34	16	48
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +k+ G g+W++ ++ g+ R++k+c++rw +yl XP_016447833.1 2 IKENGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 34 7999***********99**********97 PP
2	Myb_DNA-binding	54	3.7e-17	40	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l XP_016447833.1 40 RGNFSQDEEDLILRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 85 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	0.00404	1	34	No hit	No description
SMART	SM00717	30	1	36	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-14	1	41	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.611	1	34	IPR017930	Myb domain
Pfam	PF00249	8.5E-7	2	34	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.6E-21	2	81	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.879	35	89	IPR017930	Myb domain
SMART	SM00717	4.0E-16	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-16	40	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-26	42	90	IPR009057	Homeodomain-like
CDD	cd00167	7.16E-11	42	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
YIKENGEGQW RSLPKNAGLL RCGKSCRLRW MNYLRPGIKR GNFSQDEEDL ILRLHSLLGN 60 RWSLIAGRLP GRTDNEIKNY WNTHLIKKLK SAGIEPKPHK KFSKCSKKES RKGPQQEKSR 120 KKQGKKSNNK NNEGQIVQVE KIQVFTPKPI RISSEVLSRN NSFENVTLST NCSSNSNFEE 180 ADVDIKETEL KLEEVSFFPR DLDFGKLLEG DANLDEFLIQ ESSYISNKYS VPMNESMLEK 240 VYEEYLLLLS ENCYLQDDHQ K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-20	2	91	22	110	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447833.1	0.0	PREDICTED: myb-related protein 330-like, partial
TrEMBL	A0A1S3Y6J3	0.0	A0A1S3Y6J3_TOBAC; myb-related protein 330-like
STRING	XP_009602702.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-54	myb domain protein 5