PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016447743.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 504aa MW: 55866.2 Da PI: 7.5303

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	2	21	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ff+r G+C G++C+F H XP_016447743.1 2 RCEFFSR-GWCIKGNSCRFLH 21 5****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.197	1	24	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-5	2	21	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAMI KGKLANGKGL EENGKRSVLD 60 GSSDSVPSAV QSGENIKLRS DEELHMRMDG PSSIPEVGRE SLGCKPYLAG YSTSSSPLLK 120 DGSVHKNSLH GGKRSSVLLS DSHQNTVVSS YTSGLDNVKY KRSRSVHDNH GLQVLNDSVD 180 RLSHRCSSSR NIDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS RVDLSRDARR 240 SSDYKTKVSS DNWEPSVPFR PSFFLSQIIG CPESLYDPLR DSIEQSNVGD GPSKFSSSGK 300 GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE LSNNEADTAD 360 TAVAHQEHVN TSSKADKLNL STELLHTRLR KKTKSEFERL EHGNEIDIDW KTDRSVNKES 420 RVLKHFHAAL VEFVKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH QVPGTAESIR 480 QYLSVSQPKL AKLIEAYVDK YGKS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MRCEFFSRGW CIKGNSCRFL HIKDHVTSHD KDVILDEAMI KGKLANGKGL EENGKRSVLD  60
GSSDSVPSAV QSGENIKLRS DEELHMRMDG PSSIPEVGRE SLGCKPYLAG YSTSSSPLLK  120
DGSVHKNSLH GGKRSSVLLS DSHQNTVVSS YTSGLDNVKY KRSRSVHDNH GLQVLNDSVD  180
RLSHRCSSSR NIDALDDQKL LDSSQEYSSS KSTSLQQKSS AFPSSEAELS RVDLSRDARR  240
SSDYKTKVSS DNWEPSVPFR PSFFLSQIIG CPESLYDPLR DSIEQSNVGD GPSKFSSSGK  300
GGPVFTKCTQ ENDDPVSPGT LGPEQSSNKH PISGHVYHRD ILPDNLSEKE LSNNEADTAD  360
TAVAHQEHVN TSSKADKLNL STELLHTRLR KKTKSEFERL EHGNEIDIDW KTDRSVNKES  420
RVLKHFHAAL VEFVKELLKP TWSEGLMSKD AYKIIVKKTV DKVVNSLHPH QVPGTAESIR  480
QYLSVSQPKL AKLIEAYVDK YGKS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447743.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
TrEMBL	A0A1S3Y656	0.0	A0A1S3Y656_TOBAC; protein FRIGIDA-ESSENTIAL 1-like
STRING	XP_009598530.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3004	21	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-25	C3H family protein