PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447064.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 295aa    MW: 33475.4 Da    PI: 10.4981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27e-39822312133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesss 79 
                     ++k+ r ski T++g+RdRRvRls+ +a++fFdLq+ LGfdk+skt++WL++++k ai el++                  ++++a++c ++ + 
  XP_016447064.1  82 PKKRERFSKILTSQGPRDRRVRLSIAIARKFFDLQEILGFDKPSKTLDWLFTNSKLAIEELANWsthqdhhpkiagatkssCNETAKDCASQCED 176
                     68999**********************************************************96666666555544333322222333222222 PP

             TCP  80 ssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                      +  +++ ++++++ ak+kk+ k++a+ l l + esrakarararert +km  +
  XP_016447064.1 177 LAITTNEGSERKPKRAKEKKEVKDEATDLVLVArESRAKARARARERTIKKMWSR 231
                     2222333335556666888888888888888888*****************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.8282142IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-3783229IPR005333Transcription factor, TCP
PROSITE profilePS5137010.869210227IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MFPASNSTGN PPPHPSLSFH SSSPFLGLNG NQILLHHYQN QLSSHHFAKN MTLSANNIIN  60
SPNYHQNHSD NSLRSFPINK KPKKRERFSK ILTSQGPRDR RVRLSIAIAR KFFDLQEILG  120
FDKPSKTLDW LFTNSKLAIE ELANWSTHQD HHPKIAGATK SSCNETAKDC ASQCEDLAIT  180
TNEGSERKPK RAKEKKEVKD EATDLVLVAR ESRAKARARA RERTIKKMWS RIETSQRSTS  240
QLIRSSFHPN FSAPIESSTT YYGSSSFNTE NLDKGTTSEL QGRWKQWDSS HSNQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447064.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1S3Y4H50.0A0A1S3Y4H5_TOBAC; transcription factor CYCLOIDEA-like
STRINGXP_009617266.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-23TCP domain protein 12