PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016447001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 264aa MW: 29604.5 Da PI: 6.7439 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.6e-18 | 176 | 210 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l XP_016447001.1 176 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 210 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-81 | 2 | 254 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 6.0E-14 | 169 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 6.5E-16 | 170 | 220 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.266 | 170 | 206 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-15 | 171 | 234 | No hit | No description |
CDD | cd00202 | 9.52E-14 | 175 | 222 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.3E-16 | 176 | 210 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDVYGVSAPD LFRIDDLLDF SNDEIFSINS NSSSTTATPD SQHHHHHLHQ PHSDNSSAAT 60 ANYYDALLPN CSDDFTDNLC VPSDDVAELE WLSNFVEDSF SSFPTNSVTG TMNLSSNTTA 120 SFHGRSRSKR SRSTSSWTSS LQNPNTTTTT TMKNKEISVY TRERSSSMDD DVPRRCTHCA 180 SEKTPQWRTG PLGPKTLCNA CGVRFKSGRL VPEYRPAASP TFVLTQHSNS HRKVMELRRQ 240 KEMIHQQPPP PTEEGMYGHH FRVC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 129 | RSRSKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB107691 | 0.0 | AB107691.1 Nicotiana tabacum AGP3 mRNA for AG-motif binding protein-3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776947.1 | 0.0 | PREDICTED: GATA transcription factor 4 | ||||
Refseq | XP_016447001.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Swissprot | O49743 | 5e-73 | GATA4_ARATH; GATA transcription factor 4 | ||||
TrEMBL | A0A1S3Y4C9 | 0.0 | A0A1S3Y4C9_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7WAC9 | 0.0 | A0A1U7WAC9_NICSY; GATA transcription factor | ||||
STRING | XP_009776947.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 5e-63 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
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