PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446672.1 | ||||||||
Common Name | TGA1, TGA1A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 373aa MW: 42303.1 Da PI: 6.3248 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.8 | 3e-10 | 88 | 124 | 5 | 41 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 k+ rr+++NReAAr+sR+RKka++++Le+ +L + XP_016446672.1 88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQL 124 789*************************865555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-7 | 82 | 133 | No hit | No description |
SMART | SM00338 | 0.0018 | 84 | 137 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.852 | 86 | 130 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-7 | 88 | 119 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.81E-6 | 88 | 129 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 91 | 106 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.1E-29 | 175 | 249 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MNSSTYTQFA ASRRMGICDP IHQLGMWDDF NSSFPSTSAT MILEVDKCLE DQIPIMEKRL 60 DNETEDTSHG TVGTSNRYEP ETSKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK 120 LIQLEQELER ARKQGMCVGG GVDASQLSYS GTASSGTAVF DMEYGHWVEE QTRQTNDLRI 180 ALHSQIGEAE LRIIVDGYLN HYFDLFRMKA TAAKADVLYI MSGMWKTSAE RFFMWIGGFR 240 PSELLKVLTP HLELLTEQQL REVCNLTQSC QQAEDALSQG MVKLHQILAE AVAAGRLGEG 300 NYTLPQMGPA IEKLEDLVRF VNQADHLRQE TLQQMSRILN TCQAAQGLLA LGEYFERLRV 360 LSSQWATRLR EPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00642 | SELEX | 26531826 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search P14232 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X16449 | 0.0 | X16449.1 Tobacco mRNA for TGA1a DNA-binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446672.1 | 0.0 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1 | ||||
Swissprot | P14232 | 0.0 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | A0A1S3Y461 | 0.0 | A0A1S3Y461_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1 | ||||
STRING | XP_009593001.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA780 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-159 | bZIP family protein |