PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 404aa MW: 44346.2 Da PI: 4.8267 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.1 | 5.5e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ XP_016446102.1 4 TCEFCGEQRSIVYCRSDAACLCLSCDRHVHSAnalsqrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 29.3 | 1.8e-09 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++++++++ C +++ lC++C +H + H+++ XP_016446102.1 46 LVCERCNSQPAIFRCDEDRISLCQNCDWIGHANsssgstHKRQ 88 68*****************************888888999876 PP | |||||||
3 | CCT | 61.3 | 3.2e-21 | 347 | 390 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR+F+K++rY+sRKa+A+ R RvKGrFvk+ XP_016446102.1 347 RSDAVLRYKEKKKTRQFDKRVRYASRKARADVRRRVKGRFVKAG 390 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.8E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.69E-7 | 5 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.129 | 5 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.286 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-5 | 46 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.65E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.3 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.9E-16 | 347 | 389 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.16 | 347 | 389 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGFTCEFCGE QRSIVYCRSD AACLCLSCDR HVHSANALSQ RHSRTLVCER CNSQPAIFRC 60 DEDRISLCQN CDWIGHANSS SGSTHKRQAL SCYTGCPSAV ELSVIWSFLL DNPSVGDSTC 120 EQGMSSMSIT DCRPGDSRGS QAKDKSQDMS VAVEANDLMG SLMLSLDSKL HNVEPPVGST 180 NLTWSKVSNS ATKGSNIFDD DRFYDDFNMD EVDLSIETYE ELFGVSLDNP DQLFKNEDID 240 GLFGMKDMAV AESSCQGDTA VEGSALGRVN TVQPACSNAA SAESTMSCKT EPTLCFARQQ 300 SNLSVSNLTG ESSAGDYQDY GASSMLLMGE PPWCSPCPES SMPSTSRSDA VLRYKEKKKT 360 RQFDKRVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSE TRSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446102.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 1e-132 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A1S3Y2B3 | 0.0 | A0A1S3Y2B3_TOBAC; zinc finger protein CONSTANS-LIKE 9-like | ||||
STRING | XP_009601056.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-111 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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