PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016446011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 672aa MW: 76924.5 Da PI: 8.4729 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65 | 2.1e-20 | 55 | 148 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY e+A+ +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_016446011.1 55 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHELL 148 6**************9998877356667999****************99**********************99777789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-17 | 55 | 148 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-20 | 271 | 362 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.705 | 549 | 582 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.9E-7 | 552 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.2E-6 | 557 | 584 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MMVLYGDSSD QRSLSLDDTS STEESPDQTR LSLETTNDAV PYIGQRFPTH DAAYEFYAEF 60 ARGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNKPQRNR KSSRCGCQAY 120 MRISKTTDLG VPEWRVTGFM NHHNHELLEP NQVRFLPAYR SISNSDKSRI LMFAKTGISV 180 QQMMRLMELE KGVEPGFLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRS IKEKDPNFKY 240 DFSLDSNNRL ENIAWSYASS IQSYDVFGDA VVFDTTHRLT AFDMPLGIWV GVNNYGMPCF 300 FGCVLLREET LRSYSWSLKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP STKHALCIWL 360 IVSKFPSWFN AVLGVRYNDW KAEFHRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFA 420 LRSLWALPYL RSHVFAGMTT AGHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQAGE 480 QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQT EDSFLVRHHT 540 KLEGGRKVYW VPREGIISCS CHQFEFSGIL CRHALRVLST GNCFQIPDRY LPHRWRRIST 600 PSTKSLQNTH NDHTERVQLL QSMVSTLVTE SAKSRERLEI ATENVSILLS RIREQPICSQ 660 GVRELSSNQR NI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016446010.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A1S3Y1N1 | 0.0 | A0A1S3Y1N1_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X2 | ||||
STRING | XP_009765793.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
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