PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445999.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 578aa    MW: 63134.5 Da    PI: 8.1216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19321420198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_016445999.1 321 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 411
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_016445999.1 412 GKLVMGCRK 420
                     656666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-30317421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-20318417IPR015300DNA-binding pseudobarrel domain
CDDcd100179.00E-24319420No hitNo description
PROSITE profilePS5086311.082321422IPR003340B3 DNA binding domain
SMARTSM010197.8E-23321421IPR003340B3 DNA binding domain
PfamPF023621.2E-16321420IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILPERIK DVNNWNPIAG  120
SGPVPWRQAP SLFNGSAIQN ELQPRTPFLD ATGSVDRLCL GERPSTSSSD NNRKDSCEKL  180
MNGNLKIGVP GTLENGYAGL NHEEPPKSCI SGPPQLSYAK NDLSAPSFSL TIGSACKNEP  240
TDHSKVSVSL QQQTTLSTPL GKQLGGHATV DYAGETQVRN SKTRGDGRGK HHLLPRYWPR  300
ITDEELQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKV  360
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DIVTFSRIEP EGKLVMGCRK  420
ASTTLTADQG SEACSNSNGV VTNGNVNTKS TKFSEVLANS TKKGFSSTTH VAPADSTIAW  480
AETKMSDDMA MEFLGNNRSI RCKRKSSTLG SKTKRLRIDN EDLVELKVTV VQAQGLMRPP  540
SSDAPTVIVI EGCEFEEYEV PCFLAVYCLP ILAGYRSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-662994222125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-114HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445999.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ0D5G41e-153Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S3Y1J30.0A0A1S3Y1J3_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2
STRINGXP_009616960.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-125HSI2-like 1