PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445998.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 594aa    MW: 64915.6 Da    PI: 8.1235
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.72.4e-19337436198
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k l+ sd+++ grlvlpkk+ae++    +  ++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  XP_016445998.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 427
                     89**************************543..556667***************9989999999***9.********************887.56 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     ++lv++ ++
  XP_016445998.1 428 GKLVMGCRK 436
                     656666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-30333437IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-20334433IPR015300DNA-binding pseudobarrel domain
CDDcd100179.78E-24335436No hitNo description
SMARTSM010197.8E-23337437IPR003340B3 DNA binding domain
PfamPF023621.2E-16337436IPR003340B3 DNA binding domain
PROSITE profilePS5086311.082337438IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP  180
STSSSDNNRK DSCEKLMNGN LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS  240
APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EVLANSTKKG  480
FSSTTHVAPA DSTIAWAETK MSDDMAMEFL GNNRSIRCKR KSSTLGSKTK RLRIDNEDLV  540
ELKVTVVQAQ GLMRPPSSDA PTVIVIEGCE FEEYEVPCFL AVYCLPILAG YRSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-653154381124B3 domain-containing transcription repressor VAL1
5yzz_C2e-653154381124B3 domain-containing transcription repressor VAL1
5z00_C2e-653154381124B3 domain-containing transcription repressor VAL1
5z00_G2e-653154381124B3 domain-containing transcription repressor VAL1
5z00_K2e-653154381124B3 domain-containing transcription repressor VAL1
5z00_M2e-653154381124B3 domain-containing transcription repressor VAL1
6j9a_A2e-653154382125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-114HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445997.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_016445998.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ0D5G41e-153Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S3Y1X90.0A0A1S3Y1X9_TOBAC; B3 domain-containing transcription repressor VAL2-like isoform X1
STRINGXP_009616960.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-110VP1/ABI3-like 3