 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016445501.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
LBD |
| Protein Properties |
Length: 194aa MW: 21530.2 Da PI: 8.2927 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016445501.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 144.5 | 3.1e-45 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+Ca+Ck+lrr+C +dCv+apyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la
XP_016445501.1 12 PCAGCKLLRRRCGEDCVFAPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLA 106
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
XP_016445501.1 107 MAQAE 111
99876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MKEYCGKNSS SPCAGCKLLR RRCGEDCVFA PYFPADEPHK FANVHKVFGA SNVSKMLQEL 60
PEHKRGDAVS SMVYEANARV RDPVYGCVGA ISSLQQQIDM LRTQLAMAQA EVVHLRLRQS 120
AGITNSPINS GSPSSHIMGS HQPKGYFHMD LDVDQSNNGF NEPMWPXFPH NGLSPAQRIF 180
PYGFGCRPVQ QQLQ
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975514 | 8e-52 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
