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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016445000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 77102.7 Da PI: 7.3913 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75 | 8.7e-24 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_016445000.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 213 89****************************986445444..8999*********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_016445000.1 214 NGDLCVGIRRA 224 8999****997 PP | |||||||
2 | Auxin_resp | 113.9 | 1.5e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eFvvk++ v++a++v++s GmRfkm fetedss++++ +Gt+++v+ dp++WpnS+Wr+L+ XP_016445000.1 291 AAKLAACGQPFEVVYYPRASTPEFVVKASAVRAAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVEDPIHWPNSPWRLLQ 374 6889999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-38 | 114 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.29E-30 | 116 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.70E-22 | 122 | 223 | No hit | No description |
Pfam | PF02362 | 4.5E-22 | 123 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 123 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-23 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-32 | 291 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.352 | 610 | 690 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MINIMNPVNK PMNEVEKGLD PQLWHACAGG MVQMPPLNSK AFYFPQGHAE HAHKNVDFGV 60 FPKIPPLTLC RVSSIRYLAD TETDEVYAKI RLIPLKGNEC DVEDDAGFLG LDKNENQEKP 120 NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR 180 GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGS GPEVPSGWNT 240 GPGNYASSLY HGFPGFLSED EKKFIRNGQA AKSDDGIRGK GKVRAESVVE AAKLAACGQP 300 FEVVYYPRAS TPEFVVKASA VRAAMRVQWS SGMRFKMPFE TEDSSRISWF MGTISSVHVE 360 DPIHWPNSPW RLLQVHWDEP DLLQNVKRVS PWLVELVSNM PPIHLSPFSP PRKKLRLPQP 420 PEFPMVGQLS MSSLLNNPLS PSSPLCCISD NIPAGIQGAR HAQCGLPSSD VHFNKLQAGL 480 LPFGFKELER SVPPSRLLKG GSFMTSFDND ENISCLLTMG NTSPTSTKRK ETQTPTFMLF 540 GRPILTEQQM SLSCSSETVG NSLSNGNPEK MMNLSEGSGS AVIHNGPPEN SSGEVLPWYK 600 DQKLEFRMET GHCKVFMESE DVGRTLDLSV LGSYEELYKK LADMFGVGTS EMLSNVLYQD 660 LTGTVKHTGD EPFSQFVKTA RRLTILTDSG SDNIRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-75 | 19 | 395 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445000.1 | 0.0 | PREDICTED: auxin response factor 16-like | ||||
Refseq | XP_016445001.1 | 0.0 | PREDICTED: auxin response factor 16-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1S3XYM5 | 0.0 | A0A1S3XYM5_TOBAC; Auxin response factor | ||||
STRING | XP_009784518.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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