PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 745aa MW: 82655 Da PI: 7.0532

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016444839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	528	565	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_016444839.1 528 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 565 664459******************************88 PP
2	BELL	118	4.3e-38	389	459	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +q++k kLls+ +eVdkrY++y+eq+q+v++sF+ v+g g+a+pYt+lA+ka+SrhF+cLkdaia q+ XP_016444839.1 389 RIGHQRRKIKLLSMFDEVDKRYNHYCEQMQMVVNSFDLVMGFGAAAPYTALAQKAMSRHFKCLKDAIAAQL 459 6679****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-72	312	457	IPR006563	POX domain
Pfam	PF07526	9.4E-52	317	456	IPR006563	POX domain
PROSITE profile	PS50071	12.487	506	569	IPR001356	Homeobox domain
CDD	cd00086	6.54E-12	509	570	No hit	No description
SMART	SM00389	4.0E-9	509	573	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	511	575	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-28	512	575	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	526	565	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MVIHFNKSKA VHNPIQLPKK SISLDNSMSQ DYHHQGLFSF SSVFEKPQNE QQQHIAHQIR 60 QEKLRVEGFN PPPPLVAIEE EQSSGLQVYG TAGMLSEMFN FPPGTTTATA TELLQNQLTQ 120 CYRHPNQRPQ QQLPWTTNLG SEWFSNRQGM VVGGSLQVLS ESIDNLKELN DRNNITAHYQ 180 RQHNQISSIN AAESAMNLFA MNPQPRSPSP SSSHPTTTTL QGFPNAGGGH FGQFICGGAS 240 NTGNNFTNEI GGVNVIEGQG LSLSLSSSLQ HLEAAKVEDQ LRMSGEEMLF FNQGTSENHH 300 HHQVHVGFGS SLGLVNVLRN SKYAKAAQEL LEEFCSVGRS QLFKKNKVSR NNNTTTSSNP 360 NSNNPSRSNN HNTNSSSSKD LPPLSAADRI GHQRRKIKLL SMFDEVDKRY NHYCEQMQMV 420 VNSFDLVMGF GAAAPYTALA QKAMSRHFKC LKDAIAAQLK HSCELLGEKD TTTSGLTKGE 480 TPRLKLLEKS LRQQQTAFHQ MGMMDAEAWR PQRGLPERSV TILRAWLFEH FLHPYPSDAD 540 KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQKEAK EEEDDEMEKS QNSSNNIAQT 600 PTPNSSTNTI TTGTGTETKT AATVAATILT VASDKRSEIN VLENDPSIVA MNRLCFSENQ 660 AQHHESSSMA THEMAHNNFP AIQDSDDMSR REAVSGVEYG TTNIMANSDN GTRVIRFGTS 720 VAGDVSLTLG LHHAGNLPEN SHFFG

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MVIHFNKSKA VHNPIQLPKK SISLDNSMSQ DYHHQGLFSF SSVFEKPQNE QQQHIAHQIR  60
QEKLRVEGFN PPPPLVAIEE EQSSGLQVYG TAGMLSEMFN FPPGTTTATA TELLQNQLTQ  120
CYRHPNQRPQ QQLPWTTNLG SEWFSNRQGM VVGGSLQVLS ESIDNLKELN DRNNITAHYQ  180
RQHNQISSIN AAESAMNLFA MNPQPRSPSP SSSHPTTTTL QGFPNAGGGH FGQFICGGAS  240
NTGNNFTNEI GGVNVIEGQG LSLSLSSSLQ HLEAAKVEDQ LRMSGEEMLF FNQGTSENHH  300
HHQVHVGFGS SLGLVNVLRN SKYAKAAQEL LEEFCSVGRS QLFKKNKVSR NNNTTTSSNP  360
NSNNPSRSNN HNTNSSSSKD LPPLSAADRI GHQRRKIKLL SMFDEVDKRY NHYCEQMQMV  420
VNSFDLVMGF GAAAPYTALA QKAMSRHFKC LKDAIAAQLK HSCELLGEKD TTTSGLTKGE  480
TPRLKLLEKS LRQQQTAFHQ MGMMDAEAWR PQRGLPERSV TILRAWLFEH FLHPYPSDAD  540
KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEDMYQKEAK EEEDDEMEKS QNSSNNIAQT  600
PTPNSSTNTI TTGTGTETKT AATVAATILT VASDKRSEIN VLENDPSIVA MNRLCFSENQ  660
AQHHESSSMA THEMAHNNFP AIQDSDDMSR REAVSGVEYG TTNIMANSDN GTRVIRFGTS  720
VAGDVSLTLG LHHAGNLPEN SHFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	515	572	5	62	Homeobox protein Meis2
3k2a_B	2e-15	515	572	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016444838.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
Refseq	XP_016444839.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
Swissprot	Q9SW80	1e-148	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S3XY34	0.0	A0A1S3XY34_TOBAC; BEL1-like homeodomain protein 4 isoform X1
STRING	XP_009605852.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-133	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]