PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016444604.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 465aa MW: 53145.9 Da PI: 6.384

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016444604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	292.6	1.1e-89	85	461	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ Ll A+av+++++ a + L +l +++s gd++qR+aayf+ +L arl+ s y+ + +t+ +ee+ a++ f++vsP+++f+h XP_016444604.1 85 LIHSLLISATAVDENSFDSAVENLHELYQNVSLLGDSVQRVAAYFADGLIARLLTRNSPFYDMIMKLPTQ----EEEFLAFTEFYKVSPFYQFAH 175 57999999*********************************************9*999888886....78889999********* PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182 +t NqaIlea+e+e +H+iDfdis+G+QWp+L+q+L++ ++ p sl+iT g+ +el+et+ rL +fA+ + +++fef+ + XP_016444604.1 176 FTSNQAILEAFEKEektnnGLLHVIDFDISYGFQWPSLIQSLSENAATPNriSLKITSYGK----TIDELRETETRLVSFAKGFrNLSFEFQGV- 265 *********955544456*****************9996665579****....99***********9758****7. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 l+ +l++L +++E+la+nl+++l +l s s +++Lk v +l P +v++veqe + ++Fl rf+e+l+y++a+fdsl+ lp XP_016444604.1 266 ---LSGSKLSNLIKRKNETLAINLIFHLNSLS--SYSK---VSHTLKEVHNLCPSIVTIVEQEGCKSPQNFLPRFMESLHYFAAMFDSLDDCLPI 352 ...778889999999*********99997..4444...458*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...........eesgslv 359 +s er ++E+ llg+ei+nv+ e+++ r e++e+W+ r+e+ GF +pls+k+ +qaklll+ + s +++ e+ ++ XP_016444604.1 353 DSIERLSIEKNLLGKEIKNVLNYEKNNnFLSRYEQMETWKGRMESHGFLGLPLSSKNIMQAKLLLKIRShSSPIQLDggnggfmifetEDPRAIS 447 ********************9993469******************************977644434444444444444544455555 PP GRAS 360 lgWkdrpLvsvSaW 373 l W+d ++v++SaW XP_016444604.1 448 LAWQDWSIVTASAW 461 ************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.874	59	430	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-87	85	461	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MGDIVDQEEE LLCLRLAIVT NSCCERKKIK KRKRKELAFI NTWDLNESNY CEGKIFRLLE 60 LRESMLKIDV KKKASVVEDG KGLHLIHSLL ISATAVDENS FDSAVENLHE LYQNVSLLGD 120 SVQRVAAYFA DGLIARLLTR NSPFYDMIMK LPTQEEEFLA FTEFYKVSPF YQFAHFTSNQ 180 AILEAFEKEE KTNNGLLHVI DFDISYGFQW PSLIQSLSEN AATPNRISLK ITSYGKTIDE 240 LRETETRLVS FAKGFRNLSF EFQGVLSGSK LSNLIKRKNE TLAINLIFHL NSLSSYSKVS 300 HTLKEVHNLC PSIVTIVEQE GCKSPQNFLP RFMESLHYFA AMFDSLDDCL PIDSIERLSI 360 EKNLLGKEIK NVLNYEKNNN FLSRYEQMET WKGRMESHGF LGLPLSSKNI MQAKLLLKIR 420 SHSSPIQLDG GNGGFMIFET EDPRAISLAW QDWSIVTASA WHCVL

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MGDIVDQEEE LLCLRLAIVT NSCCERKKIK KRKRKELAFI NTWDLNESNY CEGKIFRLLE  60
LRESMLKIDV KKKASVVEDG KGLHLIHSLL ISATAVDENS FDSAVENLHE LYQNVSLLGD  120
SVQRVAAYFA DGLIARLLTR NSPFYDMIMK LPTQEEEFLA FTEFYKVSPF YQFAHFTSNQ  180
AILEAFEKEE KTNNGLLHVI DFDISYGFQW PSLIQSLSEN AATPNRISLK ITSYGKTIDE  240
LRETETRLVS FAKGFRNLSF EFQGVLSGSK LSNLIKRKNE TLAINLIFHL NSLSSYSKVS  300
HTLKEVHNLC PSIVTIVEQE GCKSPQNFLP RFMESLHYFA AMFDSLDDCL PIDSIERLSI  360
EKNLLGKEIK NVLNYEKNNN FLSRYEQMET WKGRMESHGF LGLPLSSKNI MQAKLLLKIR  420
SHSSPIQLDG GNGGFMIFET EDPRAISLAW QDWSIVTASA WHCVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	93	461	27	378	Protein SCARECROW
5b3h_A	1e-54	93	461	26	377	Protein SCARECROW
5b3h_D	1e-54	93	461	26	377	Protein SCARECROW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	34	KKIKKRKRK
2	29	34	KKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016444604.1	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A1S3XXK5	0.0	A0A1S3XXK5_TOBAC; scarecrow-like protein 21
STRING	XP_009792508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12354	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	1e-56	SCARECROW-like 21