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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016444536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 442aa MW: 49195.9 Da PI: 7.0322 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 61 | 81 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r H XP_016444536.1 61 CHVCNKGFSSGKALGGHMRIH 81 *******************99 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00013 | 123 | 142 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk F++ +L H+r XP_016444536.1 123 TCSICGKNFPSMKSLFGHMR 142 6******************8 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0014 | 316 | 331 | 1 | 16 |
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ykC+ C ksF +++ L XP_016444536.1 316 YKCNTCEKSFATHHAL 331 9**********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.8E-8 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.515 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-9 | 60 | 81 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-9 | 117 | 144 | No hit | No description |
SMART | SM00355 | 0.018 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 123 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.9E-8 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 316 | 348 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MVDYQDHRVG NETLWIKLKI SEKDVLKDHR QVPVEDHEYD QVDEDEDEVE IPKNNDSRRI 60 CHVCNKGFSS GKALGGHMRI HVQAAKKGKR LKPLVDKKRI LQQQDLHGQV DFENYNNQLQ 120 PPTCSICGKN FPSMKSLFGH MRCHPERAWR GIQPPVNNKN TCLSSSVSDE IDAKTASATA 180 TISGDLSKSV PGWSVTAKRG RKPIAEATND DKEQLDDVVH HLMLLANGNS LESGLTGDRC 240 YYNKHGIPEE ELEITNSNSV SSKTEAHEEL ASHVNENKKR RKKVKLRFLG SVQDAANPVT 300 LVNDQNPAIV TPPDKYKCNT CEKSFATHHA LGVGVGVGVG VGGHRSSHNK FRMVIQNSNV 360 GTSYSMIDPV NASSSKNGNK NFTTNIRCQW GSPIGPSSSQ LTSPGEVSGR RILDFDLNEL 420 PPYEDEDEVA GDHEYFQFFQ FN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 281 | KKRRK |
2 | 277 | 282 | KKRRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB000454 | 9e-35 | AB000454.1 Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444536.1 | 0.0 | PREDICTED: zinc finger protein Xfin-like | ||||
TrEMBL | A0A1S3XX67 | 0.0 | A0A1S3XX67_TOBAC; zinc finger protein Xfin-like | ||||
STRING | XP_009620226.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 6e-20 | C2H2 family protein |