PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444420.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 542aa    MW: 60186.2 Da    PI: 5.8503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.31.8e-1011825412374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs++sPi+ fs 
  XP_016444420.1 182 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFSNISPIPMFSS 270
                     678*************************999************************......778888999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++++ +++
  XP_016444420.1 271 FTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVLIRTF 363
                     **************************************877666689***********66..99999**************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpre 278
                     e l+++++++  gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++++sF + +++ le+ys+l++sl +a+++  
  XP_016444420.1 364 ELLSFKAIKFMDGEKTAVLLSPAIFRRI------GS---GFVNNLRRISPNMVVHVDSEglMGYGTASFRQTVIDGLEFYSTLLESLeAANIGGG 449
                     **************************98......44...8*******************87788***********************88999999 PP

            GRAS 279 s..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     +  ++++k+E+++l ++iv++va+ g++        ++W++++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+dr+Lv++S
  XP_016444420.1 450 NcgDWMRKIENFVLFPKIVEMVAAVGRR------GGGSWKDAMVAAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATS 538
                     999************************8......99*********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_016444420.1 539 AWR 541
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.978155521IPR005202Transcription factor GRAS
PfamPF035146.2E-99182541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLINNN NNNLRNATFP AAANGPNLCY EPKSVLELRR SPSPIVEKQV  60
ITNPDFSALC GGDDPLQLGD HVLSNFEDWD SLMRELGLQD DSASLSKSNH PQLSLTQSES  120
LTQFHNLSEF SADSTQFPTS DFSFSENFPQ QFQSVNQGNY INALDLSGDI HQNNWNVGFD  180
YVDELIRFAE CFETNAFQLA HVILARLNQR LRSAAGKPLQ RAAFYFKEAL QAQLAGSTRQ  240
TRPASSSDVI QTIKSYKIFS NISPIPMFSS FTANQAVLEA VDGSMLVHVI DFDIGLGGHW  300
ASFMKELADK AECRKANAPV LRITALVPEE YAVESRLIRE NLTQFARELN IGFEIDFVLI  360
RTFELLSFKA IKFMDGEKTA VLLSPAIFRR IGSGFVNNLR RISPNMVVHV DSEGLMGYGT  420
ASFRQTVIDG LEFYSTLLES LEAANIGGGN CGDWMRKIEN FVLFPKIVEM VAAVGRRGGG  480
SWKDAMVAAG FRPVGLSQFA DFQADCLLGR VQVRGFHVAK RQAEMLLCWH DRALVATSAW  540
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2618954026377Protein SCARECROW
5b3h_D2e-2618954026377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177940.0EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444420.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-148SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3XX200.0A0A1S3XX20_TOBAC; scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-151GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]