PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443984.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 262aa MW: 30215.2 Da PI: 8.2141

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	43	132	1	90
FAR1 1 kfYneYAk.evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYAk ++GFsvrk++ + +k+ +t+++++C keg+r ++k+k +++++r+etrtgC+a+++v+++ gk+++tk+eleHnH+l+ XP_016443984.1 43 NFYNEYAKkRIGFSVRKEYVNINKKLCYVTSQKLTCFKEGFRGDDKRK-YQAKNPRKETRTGCQAHIVVTRQFVGKYHITKVELEHNHPLV 132 6****7369******************************999.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-22	43	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDNFGESKCE AIAEEVLQNN FQGPIDREPA LDLEFDDNES AFNFYNEYAK KRIGFSVRKE 60 YVNINKKLCY VTSQKLTCFK EGFRGDDKRK YQAKNPRKET RTGCQAHIVV TRQFVGKYHI 120 TKVELEHNHP LVLPTMIHML PSHRNLNDIQ THEIDLAEDA GLFSKGTFDF MSLQAGGRAN 180 LGCTKLDRKN YLQTKRQKAM GQGEAGVLLE YFEKKRVEDP SFFFATNKEH RPLASFVGFN 240 NHRKMIVFGG ALMYDETSES FQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443984.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3XVT8	0.0	A0A1S3XVT8_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009761907.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-36	FAR1-related sequence 5