PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016443113.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 704aa    MW: 78866.5 Da    PI: 5.4776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016443113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.11.1e-20572668295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ d  ++++
  XP_016443113.1 572 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVLYADT-KCGK 664
                     79*************************999999********7778*******99777777777777.********************544.8888 PP

                     .EEE CS
              B3  92 lvvk 95 
                     ++++
  XP_016443113.1 665 YLIR 668
                     7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-28563676IPR015300DNA-binding pseudobarrel domain
CDDcd100151.49E-34569670No hitNo description
SuperFamilySSF1019367.26E-23570665IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-20571673IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701571673IPR003340B3 DNA binding domain
PfamPF023626.4E-17572667IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MKRGLEYHGK QDLEDGLENV MVAIDDIQSH QQTTEFVPME EEHVLGSIVG DTEIFLDGDG  60
SHSHHHHHLD VNDTSIFSTD FLPLPDFPCM SSSSSTSSAP TALSKPFPTS SSSSSASSSN  120
SASWAVLKSD AEEDVHKNIQ PPALSSTTSM ELSLPPPEDD VDCLNVMEDL GYMDLIDGNE  180
FWDPCTLFQS DNQNPQDYNM SDQSFQLSQD HQQNQESKPQ LEEEGDDDQN DGLSFFTGNS  240
ELAVIFFEWL KQNKDYISAE DMRSIKLKRS TIESASKRLG GSKEGKKQLL RLILEWVEQY  300
QLQKKAAATA ASDSPCQYQE SQLHDSSPNP NSNFQYNNAV ASDPNACFYP SPWMPTPSPY  360
IPGPDPFYPT PMAPGYAGDP YSNVPSFTNM EYQTMESAQS WPPSQFSAMA ASQYTPFPEN  420
ESNLATQANP QGLFSQYPYQ LYDGNGERLA RLGSSATKEA RKKRMARQRR LPSHHYRHHS  480
HQTQHQSQSS DQSLRIVGEN CTMSPANNPG NWVYWPSAAS SPMMMVPPPE APQPHPMTER  540
PGMQPQNHQK HASADKRSQN WKSEKNLKFL LQKVLKQSDV GNLGRIVLPK KEAESHLPEL  600
ESRDGISIAM EDIGTSRVWN MKYRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVLYADT  660
KCGKYLIRGV KVRQTGPKAE GKKPAKKNVR NSSSAVALMK QLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-365676711105B3 domain-containing transcription factor FUS3
6j9b_D3e-365676711105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443113.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLA0A1S3XT410.0A0A1S3XT41_TOBAC; B3 domain-containing transcription factor ABI3-like isoform X2
STRINGXP_009792996.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-134B3 family protein