 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016442364.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
Dof |
| Protein Properties |
Length: 401aa MW: 44563.5 Da PI: 7.3788 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016442364.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 124.9 | 2.6e-39 | 108 | 168 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss
XP_016442364.1 108 PDKLVPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 168
78999*****************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MSEVRDPEIK LFGQTIGLTQ ERGLWNRKSS SYSTSTASNE DKIISKGEFT QSKQDNELVD 60
PTADSLVEPE TSSGISDELK IQDADKETLS PKSIEEEDSS EEKTLKKPDK LVPCPRCNSM 120
ETKFCYYNNY NVNQPRYFCK NCQRYWTAGG TMRNVPVGSG RRKNKSSSTS NYGMHLPALS 180
ANETVLTFGS DKPLCDSMVS VLNIAEKEIG NDQSNGVCST SSVITEKEKN SSTHDLTWKN 240
FQAFHPQVPY FLGAPWPYSG FPVSFYPAQP YWGCTVASPW NVPWLSSDQS VHNTGPTSPT 300
LGKHSRDGSK LSTSQSGREG ERCVLIPKTL RIDDPNEAAK SSIWSTLGIK NEKIDSVRGA 360
RLFKAFNTKA DHRNRESDAS FVLQANPAAL SRSLNFREST Q
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC284850 | 1e-134 | KC284850.1 Solanum tuberosum clone CE3130 chromosome 5 cycling DOF factor-like protein (CDF1.2) mRNA, CDF1.2-f allele, complete cds. |
