PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441925.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 227aa    MW: 26342.4 Da    PI: 9.6636
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.62.6e-28311513128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                      GfrFhPtd elv +yL + v + +l++   i e d+y+ ePw   k  + +e+ +yfF++ +kk+ +++r  r++ +g Wk++ k k+v+s+kg
  XP_016441925.1  31 EGFRFHPTDAELV-KYLLQYVLKGRLPELVPIVEEDLYSKEPWVVFK--DRKERTLYFFTELKKKKIENSRFIRSVGKGSWKSQDKGKPVCSEKG 122
                     7************.89999999999888777*************962..3467899*************************************** PP

             NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                     +++g k++L + +  +p+    +W+m+ey+l
  XP_016441925.1 123 SVMGYKRSLRYQNLGSPQ--DGQWLMKEYSL 151
                     ***********9655555..89*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.15529179IPR003441NAC domain
SuperFamilySSF1019412.75E-2830179IPR003441NAC domain
PfamPF023651.6E-1731151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSQLACTSQI IMHNIKNEEK ELCIENSANT EGFRFHPTDA ELVKYLLQYV LKGRLPELVP  60
IVEEDLYSKE PWVVFKDRKE RTLYFFTELK KKKIENSRFI RSVGKGSWKS QDKGKPVCSE  120
KGSVMGYKRS LRYQNLGSPQ DGQWLMKEYS LADEVKKILH QRSRGYDKDN YVVCRVKRKV  180
AKDDPIARKE SIEAAELEAI INPTDGSTKF PNLSIDDVAK LKIMRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-19121793168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769005.11e-169PREDICTED: NAC domain-containing protein 68-like
RefseqXP_016441925.11e-169PREDICTED: NAC domain-containing protein 68-like
TrEMBLA0A1S3XPQ21e-167A0A1S3XPQ2_TOBAC; NAC domain-containing protein 68-like
TrEMBLA0A1U7W4151e-167A0A1U7W415_NICSY; NAC domain-containing protein 68-like
STRINGXP_009769005.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.17e-21NAC domain containing protein 96