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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18232.7 Da PI: 5.1521 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.2 | 6e-20 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+k +r++tf+kRr+g++KKA+EL Cda++avi fs g+++ + XP_016441870.1 9 KRIEDKAKRHTTFTKRRQGLFKKAKELAKRCDAQAAVITFSLAGNVFAF 57 79******************************************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.843 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-24 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.5E-20 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KAKELAKRCD AQAAVITFSL AGNVFAFGHP 60 SVDDVVNRYI AATSAPEEGN EIPVHKEAEK KDKDVVIENN VDQEDEETTS FELPVGDMGM 120 EELEQLEVAM VQIKKKVVDR INGIISSSKD EDLGLPYTGL TLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776268.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL61 isoform X1 | ||||
Refseq | XP_016441869.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL61 isoform X1 | ||||
TrEMBL | A0A1S3XPS3 | 1e-115 | A0A1S3XPS3_TOBAC; agamous-like MADS-box protein AGL61 isoform X1 | ||||
TrEMBL | A0A1U7WC89 | 1e-115 | A0A1U7WC89_NICSY; agamous-like MADS-box protein AGL61 isoform X1 | ||||
STRING | XP_009776268.1 | 1e-116 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 6e-22 | M-type_MADS family protein |