PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 28366.5 Da PI: 8.4495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 70 | 106 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 r +WT++E++++++a +++ + Wk+I + +g +t q XP_016441868.1 70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQ 106 789*****************77.*********.888754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-10 | 57 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.53 | 68 | 116 | IPR017884 | SANT domain |
TIGRFAMs | TIGR01557 | 4.9E-10 | 68 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.5E-6 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-5 | 69 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 70 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-5 | 72 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVSVYPTPPA GQDFYYIGDP TKMGLPGLHP IQSGSNGAGT LGNLNSSTGS VVPDDHNKKT 60 RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQFYLH LVRANKRICC 120 STKTEITEIT ASFFAVIFLC RIFYQFNIFD LFSFPFSIAV MPDFAQVYRF IGSVFDPSTR 180 DHLQRLKKMD PIDVQTALML MKNLSFNLLS PEFEDHRRLL SSYGLGAEKD KMDHPIKTDF 240 RENAIRAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX141625 | 7e-65 | JX141625.1 Cestrum nocturnum MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016441868.1 | 0.0 | PREDICTED: protein REVEILLE 6-like | ||||
Swissprot | Q8H0W3 | 8e-30 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1S3XPK4 | 0.0 | A0A1S3XPK4_TOBAC; protein REVEILLE 6-like | ||||
STRING | XP_009776265.1 | 4e-71 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 3e-32 | MYB_related family protein |
Publications ? help Back to Top | |||
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