PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441730.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 673aa    MW: 78544.6 Da    PI: 6.4373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.3e-2262146190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn Y+ke GF +r+s+s  +++ +e +++++ Cs  g+++++  +     ++r+etrtgC a+l++k+ + + w++ ++el+HnH+++
  XP_016441730.1  62 DFYNMYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLVDLKSWRIVEVELQHNHPVS 146
                     6*********************999******************9988.....9**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-2062147IPR004330FAR1 DNA binding domain
PfamPF105511.8E-23267359IPR018289MULE transposase domain
PROSITE profilePS509669.235553589IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MFQMEAVCLN SEPVFEDCEE YEDEEDCSLE EHDDEVHEKD SKMKSLQPTI GLEFGSFDEA  60
YDFYNMYGKE QGFGIRVSNS WFRSKRKERY RAKLSCSSAG FKKKSGANHP RPETRTGCPA  120
MLVIKLVDLK SWRIVEVELQ HNHPVSPEIR RFYKSHKKMI LAAKKQQEST PVTEVHTIKL  180
YRMSVDAACN GLQKIKEKDN RLPVDTSKHL ELKEGDTNAL YNYFCRMKLT NPNFFYLMDL  240
DDQGCLRNVF WADARSRAAF NYFSDAIAID TTSLRNKYEL PIISFVGVNN HGQPVLLGCG  300
FLGHESVEYF IWIFRSWHTC MLGRHPQVIV TDQSKPLQIA VSTVFPQARH CYCLSYIMQR  360
LPEKLGGLDG YESIKTQLYK AVYISLKITE FECSWGQMIN QHGLKDNKWL QSLYEDREKW  420
VPVYLKDISF MGIMPIKENE SLNPYFDDFV HKHTSFKEFV DKYDLALQRK HMKEAMADME  480
SRSSSFELKT NCNFEVQLSK IFTKEIFKKF QAEVEGMYSC FNTRQVNING PIMTFVVKER  540
VESEGSEEEV RQFEVLYETT QAEIRCICSL FNFKGYLCRH ALNVLDYNGV QEIPSQYILS  600
RWDKDYKRKF PVDSGLCHID VNNPVELYNI LHKHVMQVVE EGAQSEEHYK AVLRELEALL  660
NRFSLEDNNL ASL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441730.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1S3XP520.0A0A1S3XP52_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X2
STRINGXP_009622495.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]