PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016441729.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 684aa MW: 79797.2 Da PI: 6.5816

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016441729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	73	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ + + w++ ++el+HnH+++ XP_016441729.1 73 DFYNMYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLVDLKSWRIVEVELQHNHPVS 157 6*******************999**************9988.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-20	73	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-23	278	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.235	564	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.8E-5	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MIRKIDFLSS LLLKMEAVCL NSEPVFEDCE EYEDEEDCSL EEHDDEVHEK DSKMKSLQPT 60 IGLEFGSFDE AYDFYNMYGK EQGFGIRVSN SWFRSKRKER YRAKLSCSSA GFKKKSGANH 120 PRPETRTGCP AMLVIKLVDL KSWRIVEVEL QHNHPVSPEI RRFYKSHKKM ILAAKKQQES 180 TPVTEVHTIK LYRMSVDAAC NGLQKIKEKD NRLPVDTSKH LELKEGDTNA LYNYFCRMKL 240 TNPNFFYLMD LDDQGCLRNV FWADARSRAA FNYFSDAIAI DTTSLRNKYE LPIISFVGVN 300 NHGQPVLLGC GFLGHESVEY FIWIFRSWHT CMLGRHPQVI VTDQSKPLQI AVSTVFPQAR 360 HCYCLSYIMQ RLPEKLGGLD GYESIKTQLY KAVYISLKIT EFECSWGQMI NQHGLKDNKW 420 LQSLYEDREK WVPVYLKDIS FMGIMPIKEN ESLNPYFDDF VHKHTSFKEF VDKYDLALQR 480 KHMKEAMADM ESRSSSFELK TNCNFEVQLS KIFTKEIFKK FQAEVEGMYS CFNTRQVNIN 540 GPIMTFVVKE RVESEGSEEE VRQFEVLYET TQAEIRCICS LFNFKGYLCR HALNVLDYNG 600 VQEIPSQYIL SRWDKDYKRK FPVDSGLCHI DVNNPVELYN ILHKHVMQVV EEGAQSEEHY 660 KAVLRELEAL LNRFSLEDNN LASL

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MIRKIDFLSS LLLKMEAVCL NSEPVFEDCE EYEDEEDCSL EEHDDEVHEK DSKMKSLQPT  60
IGLEFGSFDE AYDFYNMYGK EQGFGIRVSN SWFRSKRKER YRAKLSCSSA GFKKKSGANH  120
PRPETRTGCP AMLVIKLVDL KSWRIVEVEL QHNHPVSPEI RRFYKSHKKM ILAAKKQQES  180
TPVTEVHTIK LYRMSVDAAC NGLQKIKEKD NRLPVDTSKH LELKEGDTNA LYNYFCRMKL  240
TNPNFFYLMD LDDQGCLRNV FWADARSRAA FNYFSDAIAI DTTSLRNKYE LPIISFVGVN  300
NHGQPVLLGC GFLGHESVEY FIWIFRSWHT CMLGRHPQVI VTDQSKPLQI AVSTVFPQAR  360
HCYCLSYIMQ RLPEKLGGLD GYESIKTQLY KAVYISLKIT EFECSWGQMI NQHGLKDNKW  420
LQSLYEDREK WVPVYLKDIS FMGIMPIKEN ESLNPYFDDF VHKHTSFKEF VDKYDLALQR  480
KHMKEAMADM ESRSSSFELK TNCNFEVQLS KIFTKEIFKK FQAEVEGMYS CFNTRQVNIN  540
GPIMTFVVKE RVESEGSEEE VRQFEVLYET TQAEIRCICS LFNFKGYLCR HALNVLDYNG  600
VQEIPSQYIL SRWDKDYKRK FPVDSGLCHI DVNNPVELYN ILHKHVMQVV EEGAQSEEHY  660
KAVLRELEAL LNRFSLEDNN LASL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441729.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S3XPD4	0.0	A0A1S3XPD4_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_009622495.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]