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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 17696.3 Da PI: 7.0699 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.1e-38 | 5 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+C++apyf eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael XP_016441663.1 5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVYGCVAHIFTLQQQVLTLQAEL 99 7**********************99988******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_016441663.1 100 AYVQAR 105 **9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.772 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-37 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRL 60 ETVITLCYEA LARVRDPVYG CVAHIFTLQQ QVLTLQAELA YVQARLSTLQ SASSEVAATY 120 SNISSVSMDP LFDTTGFHHV LDEELENCDI HSVAVDFVSR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 2 | 127 | 8 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 2 | 127 | 8 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789949.1 | 1e-117 | PREDICTED: LOB domain-containing protein 19 | ||||
Refseq | XP_016441663.1 | 1e-117 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O22132 | 1e-58 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-58 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S3XP11 | 1e-116 | A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like | ||||
TrEMBL | A0A1U7XST2 | 1e-116 | A0A1U7XST2_NICSY; LOB domain-containing protein 19 | ||||
STRING | XP_009789949.1 | 1e-117 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 6e-61 | LOB domain-containing protein 19 |