PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016441587.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18927.5 Da    PI: 8.6243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016441587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.3e-17349248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                     +e+k  r+vtfskR++g++ KAeE S+ ++a+v v+ fs++gk   
  XP_016441587.1  3 YVESKEARYVTFSKRKAGLFRKAEEFSTVTGADVGVLFFSPSGKPCS 49
                    5799***************************************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.02E-20170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.236154IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-16153IPR002100Transcription factor, MADS-box
PfamPF003191.9E-20450IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKYVESKEAR YVTFSKRKAG LFRKAEEFST VTGADVGVLF FSPSGKPCSY TSTSVEKIIG  60
KFREWKQQNT DEGKSSVFEA FDDLCKYKQD ENEKGKSREL RYKVMYPGVE IPPDKERLEK  120
LVEMKLRLDK INEAAKNHIQ AERLKFDLNI VPEYEVGESS GTHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772485.11e-119PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016441587.11e-119PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3XPK51e-117A0A1S3XPK5_TOBAC; agamous-like MADS-box protein AGL29
TrEMBLA0A1U7WE391e-117A0A1U7WE39_NICSY; agamous-like MADS-box protein AGL61
STRINGXP_009772485.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-16AGAMOUS-like 29