PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016441479.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 594aa MW: 68563.7 Da PI: 7.9119

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016441479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.5e-22	30	104	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eHnHel XP_016441479.1 30 EFYNAYAANLGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRFQNEHNHEL 104 6************************************9998..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-17	30	104	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-27	202	295	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.41	480	516	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-7	489	513	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-8	491	518	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
KRERIDVELQ PRGSEPYKGL EFTSAGEAYE FYNAYAANLG FKVRIGQLFR SKNDGSITSR 60 RFVCSKEGHQ HPSRVGCGAF MRIQRQETGR WLVDRFQNEH NHELGLPVDA SGRVKGFKEE 120 ASSVLENMDL VELNGGLSLV TRGRESRIGS DWYNELFEYF QARQADDMGF FYAVEMHNGR 180 AMSVFWADAR SRFSCTQFGD AVVFDTTYRK GGSYSVPLAS FIGINHHRQP VLLGCALIAE 240 ESEESFTWVF QAWLRAMSGR HPVSIVADQD RSIQHSIAQV FPGIHHRFSA WQIKATEQEN 300 IGALLSMNPE FKYEYETCIF QSQTANEFEA AWNVLVNKYN LRKNTWLMEM YRMRKSWVPL 360 HIRGTFFAGI PMDGSLKSYF GTILTSQTPL SEFLIRYEKA LEQRREEERK EDFNSFNLQA 420 VLHTKDPIED QCRRLYTITM FQVFQKELLE CYSFVGIKIN VEGAISRYLV QKSGSGDERN 480 TVAFNASSLN VSCSCKMFEF EGVLCRHALK VFQIMNIREL PSRYILHRWT KDAKYGILRD 540 VDSGGASKDH KALMLWSLRE EAKNYIEAGT ASLERYKLAF EIMQEGRRNL CWQN

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

KRERIDVELQ PRGSEPYKGL EFTSAGEAYE FYNAYAANLG FKVRIGQLFR SKNDGSITSR  60
RFVCSKEGHQ HPSRVGCGAF MRIQRQETGR WLVDRFQNEH NHELGLPVDA SGRVKGFKEE  120
ASSVLENMDL VELNGGLSLV TRGRESRIGS DWYNELFEYF QARQADDMGF FYAVEMHNGR  180
AMSVFWADAR SRFSCTQFGD AVVFDTTYRK GGSYSVPLAS FIGINHHRQP VLLGCALIAE  240
ESEESFTWVF QAWLRAMSGR HPVSIVADQD RSIQHSIAQV FPGIHHRFSA WQIKATEQEN  300
IGALLSMNPE FKYEYETCIF QSQTANEFEA AWNVLVNKYN LRKNTWLMEM YRMRKSWVPL  360
HIRGTFFAGI PMDGSLKSYF GTILTSQTPL SEFLIRYEKA LEQRREEERK EDFNSFNLQA  420
VLHTKDPIED QCRRLYTITM FQVFQKELLE CYSFVGIKIN VEGAISRYLV QKSGSGDERN  480
TVAFNASSLN VSCSCKMFEF EGVLCRHALK VFQIMNIREL PSRYILHRWT KDAKYGILRD  540
VDSGGASKDH KALMLWSLRE EAKNYIEAGT ASLERYKLAF EIMQEGRRNL CWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016441479.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like, partial
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1S3XNN8	0.0	A0A1S3XNN8_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_009601134.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]