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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_016441449.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
bHLH |
| Protein Properties |
Length: 658aa MW: 71968.9 Da PI: 5.178 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016441449.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.2 | 2.3e-11 | 486 | 531 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ +I++L
XP_016441449.1 486 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAFINEL 531
799***********************6.....5***************998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 658 aa
Download sequence Send
to blast |
MTDYRIPTMT NIWSNTTSDD NMMEAFLSSD PSSFWAGTNT PTPRSSVSPA PAPVTGIAGD 60
PLKSMPYFNQ ESLQQRLQTL IDGAREAWTY AIFWQSSVVD FVSPSVLGWG DGYYKGEEDK 120
NKRKTAAFSP DFITEQEHRK KVLRELNSLI SGTQTGGEND AVDEEVTDTE WFFLISMTQS 180
FVNGSGLPGL AMYSSSPIWV TGRERLAASH CERARQAQGF GLQTMVCIPS ANGVVELGST 240
ELIFQSADLM NKVKILFDFN IDMGATTGSG SGSCAIQAEP DPSTLWLTDP PSSVVEVKDS 300
SNTVPSSNSS KQLVFGNENS ENVNQNSQQT QGFFTRELNF SEYGFDGSNT RSGNGNVNSS 360
RSCKPESGEI LNFGDSTKRN ASSANGSLFS GQSQFGPGPA EENKNKNKKR SPASRGSNEE 420
GMLSFVSGVI LPSSNTGKSG GGGDSDHSDL EASVVKEADS SRVVDPEKRP RKRGRKPANG 480
REEPLNHVEA ERQRREKLNQ RFYALRAVVP NVSKMDKASL LGDAIAFINE LKSKVQNSDS 540
DKDELRNQIE SLRNELANKG SNYTGPPPPN QDLKIVDMDI DVKVIGWDAM IRIQSNKKNH 600
PAARLMAALM ELDLDVHHAS VSVVNELMIQ QATVKMGSRL YTQEQLRISL TSRIAESR
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 9e-67 | 66 | 260 | 2 | 195 | Transcription factor MYC3 |
| 4rqw_B | 9e-67 | 66 | 260 | 2 | 195 | Transcription factor MYC3 |
| 4rs9_A | 9e-67 | 66 | 260 | 2 | 195 | Transcription factor MYC3 |
| 4yz6_A | 9e-67 | 66 | 260 | 2 | 195 | Transcription factor MYC3 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 467 | 475 | KRPRKRGRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ859161 | 0.0 | GQ859161.1 Nicotiana tabacum MYC2b transcription factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Todd AT,Liu E,Polvi SL,Pammett RT,Page JE
A functional genomics screen identifies diverse transcription factors that regulate alkaloid biosynthesis in Nicotiana benthamiana.
Plant J., 2010. 62(4): p. 589-600
[PMID:20202168] - Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution.
Nature, 2012. 485(7400): p. 635-41
[PMID:22660326] - Spyropoulou EA,Haring MA,Schuurink RC
RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
BMC Genomics, 2014. 15: p. 402
[PMID:24884371] - Xu J, et al.
SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
Plant Cell, 2018. 30(12): p. 2988-3005
[PMID:30518626]
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