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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016441386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 530aa MW: 58911.2 Da PI: 6.6964 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 383.9 | 1.9e-117 | 157 | 529 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal..ppsetseknsseelaalklfsevsPilk 92 lv+lL++cAeav+ +d+++a+ lL++l+ a g+++qR+a++f+++La rla + +++ + p+ +++++ +++ al+l++e++P ++ XP_016441386.1 157 LVQLLITCAEAVACRDKSRASVLLSELRASALVFGTSFQRVASCFVQGLADRLALvQPLGTVGYVatPAMNKTDMVLEKKEEALRLLYEICPHIQ 251 689**************************************************9833334444441144444444488899999*********** PP GRAS 93 fshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 f+h++aN Ilea+ege+ +H++D+++s +G QW L+q+La+Rp++pp +lRiT+vg+ + e+++ +g+ L+ +A++lg+++ef++ v XP_016441386.1 252 FGHFVANCSILEAFEGESFIHVVDLGMSlglpHGHQWRRLIQSLANRPGQPPrRLRITAVGQ----NIEKVQIIGDELEAYARSLGINLEFSA-V 341 ************************99874444678*************877779********....99*************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++le+l++++++v gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl++ lp+ XP_016441386.1 342 ESNLENLKPKDIKVYDGEVLVVNSILQLHCVVKESRGALN---SVLQVVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPK 433 9*******************************88877777...8*************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+++p++ +++qak l+kv+ +g+++ ee+g+lvlgWk++p+v++S XP_016441386.1 434 YDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLAKVNaYEGFTITEEKGCLVLGWKSKPIVAAS 526 ***************************************************96..79************************************** PP GRAS 372 aWr 374 +W+ XP_016441386.1 527 CWK 529 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.673 | 131 | 510 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-115 | 157 | 529 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MTYDMVTGFL SLEPCNNDQI GYDPLENGLY LSHKELAYSL NPYTAGFKRN AASMFSSLSN 60 ESGDFKRLRR TPSLGESLGS NSNSFYSDSS SSSSGGGGSI PRTDSTNSVN SLQLAPRLHF 120 RDHVWALNQR YLAAEAIEEA AADIISQEEE NGEGMKLVQL LITCAEAVAC RDKSRASVLL 180 SELRASALVF GTSFQRVASC FVQGLADRLA LVQPLGTVGY VATPAMNKTD MVLEKKEEAL 240 RLLYEICPHI QFGHFVANCS ILEAFEGESF IHVVDLGMSL GLPHGHQWRR LIQSLANRPG 300 QPPRRLRITA VGQNIEKVQI IGDELEAYAR SLGINLEFSA VESNLENLKP KDIKVYDGEV 360 LVVNSILQLH CVVKESRGAL NSVLQVVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY 420 SAIFDSLDVM LPKYDTKRAK IEQFYFAEEI KNIVSCEGPA RVERHERVDQ WRRRMSRAGF 480 QAAPIKMVSQ AKQWLAKVNA YEGFTITEEK GCLVLGWKSK PIVAASCWKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-62 | 145 | 528 | 7 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603492.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
Refseq | XP_016441386.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S3XN64 | 0.0 | A0A1S3XN64_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009603492.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 3e-80 | GRAS family protein |